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1
MathSBML: a package for manipulating SBML-based biological models.
Bioinformatics. 2004 Nov 1;20(16):2829-31. doi: 10.1093/bioinformatics/bth271. Epub 2004 Apr 15.
2
SBMLToolbox: an SBML toolbox for MATLAB users.
Bioinformatics. 2006 May 15;22(10):1275-7. doi: 10.1093/bioinformatics/btl111. Epub 2006 Mar 30.
3
SBML-PET: a Systems Biology Markup Language-based parameter estimation tool.
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4
Supporting SBML as a model exchange format in software applications.
Methods Mol Biol. 2013;1021:201-25. doi: 10.1007/978-1-62703-450-0_11.
5
A model diagram layout extension for SBML.
Bioinformatics. 2006 Aug 1;22(15):1879-85. doi: 10.1093/bioinformatics/btl195. Epub 2006 May 18.
6
JSBML: a flexible Java library for working with SBML.
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The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core.
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8
MOCCASIN: converting MATLAB ODE models to SBML.
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9
LibSBML: an API library for SBML.
Bioinformatics. 2008 Mar 15;24(6):880-1. doi: 10.1093/bioinformatics/btn051. Epub 2008 Feb 5.
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SBML export interface for the systems biology toolbox for MATLAB.
Bioinformatics. 2007 May 15;23(10):1297-8. doi: 10.1093/bioinformatics/btm105. Epub 2007 Mar 23.

引用本文的文献

1
ODEbase: a repository of ODE systems for systems biology.
Bioinform Adv. 2022 Apr 26;2(1):vbac027. doi: 10.1093/bioadv/vbac027. eCollection 2022.
2
MathIOmica: An Integrative Platform for Dynamic Omics.
Sci Rep. 2016 Nov 24;6:37237. doi: 10.1038/srep37237.
3
Quantitative Systems Pharmacology: A Framework for Context.
Curr Pharmacol Rep. 2016 Jun;2(3):152-160. doi: 10.1007/s40495-016-0058-x. Epub 2016 Apr 8.
4
Improving collaboration by standardization efforts in systems biology.
Front Bioeng Biotechnol. 2014 Dec 8;2:61. doi: 10.3389/fbioe.2014.00061. eCollection 2014.
5
Using cellzilla for plant growth simulations at the cellular level.
Front Plant Sci. 2013 Oct 16;4:408. doi: 10.3389/fpls.2013.00408. eCollection 2013.
6
Modelling the efficacy of hyperthermia treatment.
J R Soc Interface. 2013 Aug 28;10(88):20130527. doi: 10.1098/rsif.2013.0527. Print 2013 Nov 6.
7
D-Lactate production as a function of glucose metabolism in Saccharomyces cerevisiae.
Yeast. 2013 Feb;30(2):81-91. doi: 10.1002/yea.2942. Epub 2013 Jan 30.
8
9
PathCase-SB: integrating data sources and providing tools for systems biology research.
BMC Syst Biol. 2012 Jun 14;6(1):67. doi: 10.1186/1752-0509-6-67.
10
Adaptable functionality of transcriptional feedback in bacterial two-component systems.
PLoS Comput Biol. 2010 Feb 12;6(2):e1000676. doi: 10.1371/journal.pcbi.1000676.

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Systems biology markup language: Level 2 and beyond.
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Cellerator: extending a computer algebra system to include biochemical arrows for signal transduction simulations.
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A synthetic oscillatory network of transcriptional regulators.
Nature. 2000 Jan 20;403(6767):335-8. doi: 10.1038/35002125.
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Modeling the cell division cycle: cdc2 and cyclin interactions.
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