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细菌双组分系统中转录反馈的适应性功能。

Adaptable functionality of transcriptional feedback in bacterial two-component systems.

机构信息

Department of Bioengineering, Rice University, Houston, Texas, USA.

出版信息

PLoS Comput Biol. 2010 Feb 12;6(2):e1000676. doi: 10.1371/journal.pcbi.1000676.

Abstract

A widespread mechanism of bacterial signaling occurs through two-component systems, comprised of a sensor histidine kinase (SHK) and a transcriptional response regulator (RR). The SHK activates RR by phosphorylation. The most common two-component system structure involves expression from a single operon, the transcription of which is activated by its own phosphorylated RR. The role of this feedback is poorly understood, but it has been associated with an overshooting kinetic response and with fast recovery of previous interrupted signaling events in different systems. Mathematical models show that overshoot is only attainable with negative feedback that also improves response time. Our models also predict that fast recovery of previous interrupted signaling depends on high accumulation of SHK and RR, which is more likely in a positive feedback regime. We use Monte Carlo sampling of the parameter space to explore the range of attainable model behaviors. The model predicts that the effective feedback sign can change from negative to positive depending on the signal level. Variations in two-component system architectures and parameters may therefore have evolved to optimize responses in different bacterial lifestyles. We propose a conceptual model where low signal conditions result in a responsive system with effectively negative feedback while high signal conditions with positive feedback favor persistence of system output.

摘要

一种广泛存在的细菌信号传递机制是通过双组分系统来实现的,该系统由传感器组氨酸激酶(SHK)和转录反应调节剂(RR)组成。SHK 通过磷酸化激活 RR。最常见的双组分系统结构涉及单个操纵子的表达,其转录由自身磷酸化的 RR 激活。这种反馈的作用还不太清楚,但它与过冲动力学响应以及不同系统中先前中断的信号事件的快速恢复有关。数学模型表明,只有在负反馈的情况下才能实现过冲,而负反馈还可以改善响应时间。我们的模型还预测,先前中断的信号的快速恢复取决于 SHK 和 RR 的高积累,而在正反馈机制中,这种积累更有可能发生。我们使用参数空间的蒙特卡罗抽样来探索可实现的模型行为范围。该模型预测,有效反馈符号可以根据信号水平从负变为正。因此,双组分系统结构和参数的变化可能已经进化到在不同的细菌生活方式中优化响应。我们提出了一个概念模型,其中低信号条件导致具有有效负反馈的响应系统,而高信号条件和正反馈有利于系统输出的持久性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e0c/2820520/0b016d806204/pcbi.1000676.g001.jpg

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