在软件应用程序中支持将SBML作为一种模型交换格式。
Supporting SBML as a model exchange format in software applications.
作者信息
Keating Sarah M, Le Novère Nicolas
机构信息
EMBL Outstation-European Bioinformatics Institute, Cambridge, UK.
出版信息
Methods Mol Biol. 2013;1021:201-25. doi: 10.1007/978-1-62703-450-0_11.
This chapter describes the Systems Biology Markup Language (SBML) from its origins. It describes the rationale behind and importance of having a common language when it comes to representing models. This chapter mentions the development of SBML and outlines the structure of an SBML model. It provides a section on libSBML, a useful application programming interface (API) library for reading, writing, manipulating and validating content expressed in the SBML format. Finally the chapter also provides a description of the SBML Toolbox which provides a means of facilitating the import and export of SBML from both MATLAB and Octave ( http://www.gnu.org/software/octave/) environments.
本章从起源方面描述了系统生物学标记语言（SBML）。它阐述了在表示模型时使用通用语言背后的基本原理和重要性。本章提及了SBML的发展历程，并概述了SBML模型的结构。它提供了关于libSBML的一节内容，libSBML是一个用于读取、写入、操作和验证以SBML格式表示的内容的实用应用程序编程接口（API）库。最后，本章还对SBML Toolbox进行了描述，该工具箱提供了一种在MATLAB和Octave（http://www.gnu.org/software/octave/）环境中方便地导入和导出SBML的方法。
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