Lim Young Woon, Alamouti Sepideh Massoumi, Kim Jae-Jin, Lee Sangwon, Breuil Colette
Department of Wood Science, Chair Forest Products Biotechnology, University of British Columbia, 4036-2424 Main Mall, Vancouver, BC, Canada V6T 1Z4.
FEMS Microbiol Lett. 2004 Aug 1;237(1):89-96. doi: 10.1016/j.femsle.2004.06.020.
Leptographium pyrinum, Leptographium terebrantis, Ophiostoma aureum, Ophiostoma clavigerum, and Ophiostoma robustum are very similar in morphology, host trees choice, and the way they are disseminated by bark beetles. Their phylogenetic relationships were clarified using rDNA and protein coding genes including actin, beta-tubulin, and translation elongation factor-1alpha. Protein coding gene trees showed better resolution than the rDNA tree, which generated three clades: O. clavigerum, L. terebrantis/L. pyrinum, and O. robustum/O. aureum. A combined gene phylogenetic tree, which was supported by high bootstrap values, showed that O. aureum, L. pyrinum, O. robustum, and O. clavigerum each formed distinct clades while L. terebrantis was paraphyletic to O. clavigerum. The higher variability of the protein coding genes and the congruity in their phylogenetic results suggested that these genes may be better markers for identifying closely related species. These gene trees have also facilitated the description of the evolutionary relationships among these species.
梨形细孔菌、穿孔细孔菌、金色长喙壳菌、棒形长喙壳菌和粗壮长喙壳菌在形态、寄主树选择以及被小蠹虫传播的方式上非常相似。利用包括肌动蛋白、β-微管蛋白和翻译延伸因子-1α在内的rDNA和蛋白质编码基因,阐明了它们的系统发育关系。蛋白质编码基因树比rDNA树具有更好的分辨率,rDNA树产生了三个分支:棒形长喙壳菌、穿孔细孔菌/梨形细孔菌,以及粗壮长喙壳菌/金色长喙壳菌。一个具有高自展值支持的联合基因系统发育树表明,金色长喙壳菌、梨形细孔菌、粗壮长喙壳菌和棒形长喙壳菌各自形成了不同的分支,而穿孔细孔菌相对于棒形长喙壳菌是并系的。蛋白质编码基因的较高变异性及其系统发育结果的一致性表明,这些基因可能是识别近缘物种的更好标记。这些基因树也有助于描述这些物种之间的进化关系。