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盐湖洛氏菌属新属、新种,弗里克斯洛氏菌新种和维斯福特洛氏菌新种,红杆菌属新成员,从南极湖泊的微生物垫中分离得到。

Loktanella salsilacus gen. nov., sp. nov., Loktanella fryxellensis sp. nov. and Loktanella vestfoldensis sp. nov., new members of the Rhodobacter group, isolated from microbial mats in Antarctic lakes.

作者信息

Van Trappen Stefanie, Mergaert Joris, Swings Jean

机构信息

Laboratorium voor Microbiologie, Vakgroep Biochemie, Fysiologie en Microbiologie, Universiteit Gent, K. L. Ledeganckstraat 35, B-9000 Gent, Belgium.

出版信息

Int J Syst Evol Microbiol. 2004 Jul;54(Pt 4):1263-1269. doi: 10.1099/ijs.0.03006-0.

Abstract

A taxonomic study was performed on 26 strains isolated from microbial mats in Antarctic lakes of the Vestfold Hills and the McMurdo Dry Valleys. Phylogenetic analysis based on 16S rRNA gene sequences placed these strains within the Rhodobacter group of the alpha-subclass of the Proteobacteria. Sequence similarity values for the strains with their nearest phylogenetic neighbours (Jannaschia, Octadecabacter and Ketogulonicigenium) ranged between 94.0 and 95.8%. DNA-DNA hybridizations and comparison of repetitive extragenic palindromic DNA-PCR (rep-PCR) fingerprinting patterns revealed that these strains are members of three distinct species. The isolates are Gram-negative, chemoheterotrophic, non-motile rods and their DNA G+C contents range from 59.4 to 66.4 mol%. Whole-cell fatty acid profiles are similar and the primary fatty acid in all the strains is 18 : 1 omega7c (74.1-87.7% of total). Genotypic results together with phenotypic characteristics allowed the differentiation of these species from related recognized species of the alpha-Proteobacteria and the strains are assigned to a new genus, Loktanella gen. nov., with three novel species: Loktanella salsilacus sp. nov. (type species), consisting of ten strains with LMG 21507T (=CIP 108322T) as type strain; Loktanella fryxellensis sp. nov., consisting of 12 strains with LMG 22007T (=CIP 108323T) as type strain; and Loktanella vestfoldensis sp. nov., consisting of four strains with LMG 22003T (=CIP 108321TT) as type strain.

摘要

对从南极拉斯曼丘陵和麦克默多干谷湖泊的微生物席中分离出的26株菌株进行了分类学研究。基于16S rRNA基因序列的系统发育分析将这些菌株置于变形菌门α-亚类的红杆菌属群内。这些菌株与其最近的系统发育邻种(詹氏菌属、八叠球菌属和酮古龙酸菌属)的序列相似性值在94.0%至95.8%之间。DNA-DNA杂交以及重复外显子回文DNA-PCR(rep-PCR)指纹图谱模式的比较表明,这些菌株是三个不同物种的成员。分离菌株为革兰氏阴性、化能异养、无运动性的杆菌,其DNA G+C含量在59.4至66.4 mol%之间。全细胞脂肪酸谱相似,所有菌株中的主要脂肪酸为18 : 1 ω7c(占总量的74.1 - 87.7%)。基因型结果与表型特征相结合,使得这些物种能够与α-变形菌纲中已确认的相关物种区分开来,这些菌株被归入一个新属,即洛氏菌属(Loktanella gen. nov.),包含三个新物种:盐湖洛氏菌(Loktanella salsilacus sp. nov.)(模式种),由10株菌株组成,模式菌株为LMG 21507T(=CIP 108322T);弗里克塞尔湖洛氏菌(Loktanella fryxellensis sp. nov.),由12株菌株组成,模式菌株为LMG 22007T(=CIP 108323T);以及拉斯曼丘陵洛氏菌(Loktanella vestfoldensis sp. nov.),由4株菌株组成,模式菌株为LMG 22003T(=CIP 108321TT)。

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