Cho Jang-Cheon, Giovannoni Stephen J
Department of Microbiology, Oregon State University, Corvallis, OR 97331, USA.
Int J Syst Evol Microbiol. 2004 Jul;54(Pt 4):1129-1136. doi: 10.1099/ijs.0.03015-0.
Three Gram-negative, chemoheterotrophic, non-motile, rod-shaped bacterial strains that accumulate poly-beta-hydroxybutyrate granules were isolated from the Bermuda Atlantic Time-series Study site by high-throughput culturing methods and characterized by polyphasic approaches. DNA-DNA hybridization, DNA G+C content and phylogenetic analyses based on 16S rRNA gene sequences divided the three isolates into two distinct genospecies that were clearly differentiated by fatty acid profiles, carbon source utilization patterns, antibiotic susceptibility and biochemical characteristics. The strains utilized a wide range of substrates, including pentoses, hexoses, oligosaccharides, sugar alcohols, organic acids and amino acids. DNA G+C contents were 71.5, 70.9 and 67.3 mol% for strains HTCC2516T, HTCC2523 and HTCC2597T, respectively. The most dominant fatty acid was 18 : 1omega7c in strains HTCC2516T and HTCC2523, and cyclo 19 : 0 in strain HTCC2597T. The type strains HTCC2516T and HTCC2597T were clearly differentiated by the presence or absence of 12 : 0, 12 : 1omega11c, 14 : 0, 15 : 0 and methyl 18 : 1. Phylogenetic analyses indicated that the strains formed a distinct monophyletic lineage within the Roseobacter clade in the order 'Rhodobacterales' of the Alphaproteobacteria, and which did not associate with any of the described genera. Genotypic and phenotypic differences of the isolates from the previously described genera support the description of Oceanicola granulosus gen. nov., sp. nov. with the type strain HTCC2516T (=ATCC BAA-861T=DSM 15982T=KCTC 12143T) and of Oceanicola batsensis sp. nov. with the type strain HTCC2597T (=ATCC BAA-863T=DSM 15984T=KCTC 12145T).
通过高通量培养方法,从百慕大大西洋时间序列研究站点分离出三株革兰氏阴性、化能异养、无运动性、杆状且积累聚-β-羟基丁酸酯颗粒的细菌菌株,并采用多相方法对其进行了表征。基于16S rRNA基因序列的DNA-DNA杂交、DNA G+C含量和系统发育分析,将这三株分离菌分为两个不同的基因种,它们在脂肪酸谱、碳源利用模式、抗生素敏感性和生化特性方面有明显差异。这些菌株利用多种底物,包括戊糖、己糖、寡糖、糖醇、有机酸和氨基酸。菌株HTCC2516T、HTCC2523和HTCC2597T的DNA G+C含量分别为71.5、70.9和67.3 mol%。HTCC2516T和HTCC2523菌株中最主要的脂肪酸是18 : 1ω7c,而HTCC2597T菌株中是环19 : 0。模式菌株HTCC2516T和HTCC2597T通过是否存在12 : 0、12 : 1ω11c、14 : 0、15 : 0和甲基18 : 1而明显区分。系统发育分析表明,这些菌株在变形菌门“红杆菌目”的玫瑰杆菌属内形成了一个独特的单系分支,且与任何已描述的属均无关联。与先前描述的属的分离菌的基因型和表型差异支持了新属颗粒海洋杆菌属(Oceanicola granulosus)、新种颗粒海洋杆菌(Oceanicola granulosus)的描述,其模式菌株为HTCC2516T(=ATCC BAA-861T=DSM 15982T=KCTC 12143T),以及新种巴氏海洋杆菌(Oceanicola batsensis)的描述,其模式菌株为HTCC2597T(=ATCC BAA-863T=DSM 159