Smith Jeremy C, Merzel Franci, Bondar Ana-Nicoleta, Tournier Alexander, Fischer Stefan
Computational Molecular Biophysics, Interdisciplinary Center for Scientific Computing (IWR), Im Neuenheimer Feld 368, Universität Heidelberg, 69120 Heidelberg, Germany.
Philos Trans R Soc Lond B Biol Sci. 2004 Aug 29;359(1448):1181-9; discussion 1189-90. doi: 10.1098/rstb.2004.1497.
The apparent simplicity of the water molecule belies the wide range of fascinating protein phenomena in which it participates. We review recent computer simulation work on buried, internal water molecules, discussing the thermodynamics of water molecule binding and the participation of water in proton transfer reactions. Surface water molecules are also considered, with emphasis on the modification of average solvent structure on a protein surface, the role of water in the protein dynamical 'glass' transition and a simplified description of the protein motions thereby activated.
水分子表面上看似简单,却掩盖了其参与的一系列引人入胜的蛋白质现象。我们回顾了最近关于埋藏在蛋白质内部的水分子的计算机模拟研究,讨论了水分子结合的热力学以及水在质子转移反应中的作用。我们也考虑了蛋白质表面的水分子,重点讨论了蛋白质表面平均溶剂结构的改变、水在蛋白质动态“玻璃态”转变中的作用以及由此激活的蛋白质运动的简化描述。