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短小斯拉氏菌、嗜烟碱斯拉氏菌、迟缓埃格特菌及其他相关细菌的DNA-DNA相关性及系统发育位置

DNA-DNA relatedness and phylogenetic positions of Slackia exigua, Slackia heliotrinireducens, Eggerthella lenta, and other related bacteria.

作者信息

Nakazawa F, Hoshino E

机构信息

Department of Oral Health Science, Niigata University Graduate School of Medical and Dental Sciences, Niigata, Japan.

出版信息

Oral Microbiol Immunol. 2004 Oct;19(5):343-6. doi: 10.1111/j.1399-302x.2004.00162.x.

Abstract

Recently, two asaccharolytic Eubacterium species, Eubacterium exiguum and Eubacterium lentum, and Peptostreptococcus heliotrinreducens have been reclassified as Slackia exigua, Eggerthella lenta and Slackia heliotrinireducens in the novel genera on the basis of 16S rDNA sequence analysis. But DNA-DNA relatedness among these species and other related bacteria have not been reported yet. DNA-DNA relatedness is the standard arbiter and the recommended method for the designation and evaluation of new species, particularly closely related ones. In the present study, DNA-DNA hybridization studies were performed on S. exigua, S. heliotrinireducens and E. lenta together with the other bacterial species in the related genera. The phylogenetic relationships of these species were also investigated by comparison analysis of 16S rDNA sequence data. In the DNA-DNA hybridization studies, S. exigua showed a DNA homology level of 33% to S. heliotrinireducens and 11% to E. lenta. DNA-DNA homology between S. heliotrinireducens and E. lenta was 10%. But these three species showed very low homology (less than 5%) to the related asaccharolytic species such as Eubacterium and Mogibacterium. In conclusion, the DNA-DNA relatedness data together with the evolutionary data in the present paper further support the reclassification of Eubacterium exiguum, Peptostreptococcus heliotrinreducens and Eubacterium lentum as Slackia exigua, Slackia heliotrinireducens and Eggerthella lenta, respectively.

摘要

最近,基于16S rDNA序列分析,两种不产糖的真杆菌属细菌,即微小真杆菌和迟缓真杆菌,以及黑麦草碱还原消化链球菌已被重新分类为新属中的小 Slackia菌、迟缓埃格特菌和黑麦草碱还原 Slackia菌。但这些菌种与其他相关细菌之间的DNA-DNA相关性尚未见报道。DNA-DNA相关性是新物种指定和评估的标准仲裁者及推荐方法,尤其是对于亲缘关系密切的物种。在本研究中,对小 Slackia菌、黑麦草碱还原 Slackia菌和迟缓埃格特菌以及相关属中的其他细菌物种进行了DNA-DNA杂交研究。还通过对16S rDNA序列数据的比较分析研究了这些物种的系统发育关系。在DNA-DNA杂交研究中,小 Slackia菌与黑麦草碱还原 Slackia菌的DNA同源性水平为33%,与迟缓埃格特菌的同源性为11%。黑麦草碱还原 Slackia菌与迟缓埃格特菌之间的DNA-DNA同源性为10%。但这三个物种与不产糖相关物种如真杆菌属和嗜盲杆菌属的同源性非常低(低于5%)。总之,本文中的DNA-DNA相关性数据以及进化数据进一步支持了将微小真杆菌、黑麦草碱还原消化链球菌和迟缓真杆菌分别重新分类为小 Slackia菌、黑麦草碱还原 Slackia菌和迟缓埃格特菌。

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