Layer Gunhild, Heinz Dirk W, Jahn Dieter, Schubert Wolf-Dieter
Divison of Structural Biology, German Research Center for Biotechnology (GBF), Mascheroder Weg 1, D-38124 Braunschweig, Germany.
Curr Opin Chem Biol. 2004 Oct;8(5):468-76. doi: 10.1016/j.cbpa.2004.08.001.
'Radical SAM' enzymes juxtapose a [4Fe-4S] cluster and S-adenosyl-l-methionine (SAM) to generate catalytic 5'-deoxyadenosyl radicals. The crystal structures of oxygen-independent coproporphyrinogen III oxidase HemN and biotin synthase reveal the positioning of both cofactors with respect to each other and relative to the surrounding protein environment. Each is found in an unprecedented coordination environment including the direct ligation of the [4Fe-4S] cluster by the amino nitrogen and one carboxylate oxygen of the methionine moiety of SAM, as observed for other members of the Radical SAM family by ENDOR. The availability of two protein structures supported by biochemical and biophysical data underscores common features, anticipating the structural elements of other family members. Remaining differences emphasize the plasticity of the protein scaffold in functionally accommodating 600 family members.
“自由基S-腺苷甲硫氨酸”(Radical SAM)酶将一个[4Fe-4S]簇与S-腺苷-L-甲硫氨酸(SAM)并列放置,以生成具有催化活性的5'-脱氧腺苷自由基。不依赖氧气的粪卟啉原III氧化酶HemN和生物素合酶的晶体结构揭示了这两种辅因子相对于彼此以及相对于周围蛋白质环境的定位。正如通过电子核双共振(ENDOR)对自由基SAM家族的其他成员所观察到的那样,在每个结构中都发现了前所未有的配位环境,包括SAM的甲硫氨酸部分的氨基氮和一个羧酸根氧直接与[4Fe-4S]簇配位。由生化和生物物理数据支持的两种蛋白质结构的可得性突出了共同特征,预示了其他家族成员的结构元件。其余的差异强调了蛋白质支架在功能上容纳600个家族成员时的可塑性。