Birck Catherine, Damian Luminita, Marty-Detraves Claire, Lougarre Andrée, Schulze-Briese Clemens, Koehl Patrice, Fournier Didier, Paquereau Laurent, Samama Jean-Pierre
Département de Génomique et Biologie Structurales, IGBMC CNRS/INSERM/ULP, 1 rue Laurent Fries, BP 10142, 67404-Illkirch CU Strasbourg, France.
J Mol Biol. 2004 Dec 10;344(5):1409-20. doi: 10.1016/j.jmb.2004.10.007.
A newly defined family of fungal lectins displays no significant sequence similarity to any protein in the databases. These proteins, made of about 140 amino acid residues, have sequence identities ranging from 38% to 65% and share binding specificity to N-acetyl galactosamine. One member of this family, the lectin XCL from Xerocomus chrysenteron, induces drastic changes in the actin cytoskeleton after sugar binding at the cell surface and internalization, and has potent insecticidal activity. The crystal structure of XCL to 1.4 A resolution reveals the architecture of this new lectin family. The fold of the protein is not related to any of the several lectin folds documented so far. Unexpectedly, the structure similarity is significant with actinoporins, a family of pore-forming toxins. The specific structural features and sequence signatures in each protein family suggest a potential sugar binding site in XCL and a possible evolutionary relationship between these proteins. Finally, the tetrameric assembly of XCL reveals a complex network of protomer-protomer interfaces and generates a large, hydrated cavity of 1000 A3, which may become accessible to larger solutes after a small conformational change of the protein.
一个新定义的真菌凝集素家族与数据库中的任何蛋白质都没有显著的序列相似性。这些蛋白质由约140个氨基酸残基组成,序列同一性在38%至65%之间,并且对N-乙酰半乳糖胺具有共同的结合特异性。该家族的一个成员,来自赭丝膜菌的凝集素XCL,在细胞表面糖结合和内化后会引起肌动蛋白细胞骨架的剧烈变化,并具有强大的杀虫活性。XCL的晶体结构分辨率达到1.4 Å,揭示了这个新凝集素家族的结构。该蛋白质的折叠与迄今为止记录的几种凝集素折叠均无关。出乎意料的是,其与孔形成毒素家族放线孔蛋白具有显著的结构相似性。每个蛋白质家族中的特定结构特征和序列特征表明XCL中存在一个潜在的糖结合位点,以及这些蛋白质之间可能存在的进化关系。最后,XCL的四聚体组装揭示了一个复杂的原体-原体界面网络,并产生了一个1000 ų的大的、充满水的腔,在蛋白质发生小的构象变化后,较大的溶质可能会进入该腔。