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ASRG数据库:参与前体mRNA剪接的拟南芥基因的鉴定与调查。

The ASRG database: identification and survey of Arabidopsis thaliana genes involved in pre-mRNA splicing.

作者信息

Wang Bing-Bing, Brendel Volker

机构信息

Department of Genetics, Development and Cell Biology Iowa State University, Ames, IA 50011-3260, USA.

出版信息

Genome Biol. 2004;5(12):R102. doi: 10.1186/gb-2004-5-12-r102. Epub 2004 Nov 29.

Abstract

A total of 74 small nuclear RNA (snRNA) genes and 395 genes encoding splicing-related proteins were identified in the Arabidopsis genome by sequence comparison and motif searches, including the previously elusive U4atac snRNA gene. Most of the genes have not been studied experimentally. Classification of these genes and detailed information on gene structure, alternative splicing, gene duplications and phylogenetic relationships are made accessible as a comprehensive database of Arabidopsis Splicing Related Genes (ASRG) on our website.

摘要

通过序列比较和基序搜索,在拟南芥基因组中总共鉴定出74个小核RNA(snRNA)基因和395个编码剪接相关蛋白的基因,其中包括之前难以捉摸的U4atac snRNA基因。这些基因中的大多数尚未进行实验研究。作为我们网站上拟南芥剪接相关基因(ASRG)的综合数据库,这些基因的分类以及基因结构、可变剪接、基因重复和系统发育关系的详细信息都可以获取。

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