• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

酿酒酵母细胞类型指定回路的基因组剖析。

Genomic dissection of the cell-type-specification circuit in Saccharomyces cerevisiae.

作者信息

Galgoczy David J, Cassidy-Stone Ann, Llinás Manuel, O'Rourke Sean M, Herskowitz Ira, DeRisi Joseph L, Johnson Alexander D

机构信息

Department of Biochemistry and Biophysics, University of California, 600 16th Street, San Francisco, CA 94143-2200, USA.

出版信息

Proc Natl Acad Sci U S A. 2004 Dec 28;101(52):18069-74. doi: 10.1073/pnas.0407611102. Epub 2004 Dec 16.

DOI:10.1073/pnas.0407611102
PMID:15604142
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC535907/
Abstract

The budding yeast Saccharomyces cerevisiae has three cell types (a cells, alpha cells, and a/alpha cells), each of which is specified by a unique combination of transcriptional regulators. This transcriptional circuit has served as an important model for understanding basic features of the combinatorial control of transcription and the specification of cell type. Here, using genome-wide chromatin immunoprecipitation, transcriptional profiling, and phylogenetic comparisons, we describe the complete cell-type-specification circuit for S. cerevisiae. We believe this work represents a complete description of cell-type specification in a eukaryote.

摘要

出芽酵母酿酒酵母有三种细胞类型(a细胞、α细胞和a/α细胞),每种细胞类型都由转录调节因子的独特组合所决定。这个转录调控回路已成为理解转录组合控制的基本特征和细胞类型决定的重要模型。在这里,我们通过全基因组染色质免疫沉淀、转录谱分析和系统发育比较,描述了酿酒酵母完整的细胞类型决定回路。我们认为这项工作代表了对真核生物细胞类型决定的完整描述。

相似文献

1
Genomic dissection of the cell-type-specification circuit in Saccharomyces cerevisiae.酿酒酵母细胞类型指定回路的基因组剖析。
Proc Natl Acad Sci U S A. 2004 Dec 28;101(52):18069-74. doi: 10.1073/pnas.0407611102. Epub 2004 Dec 16.
2
Genome-wide analysis of the effects of location and number of stress response elements on gene expression in Saccharomyces cerevisiae.酿酒酵母中应激反应元件的位置和数量对基因表达影响的全基因组分析。
J Biosci Bioeng. 2008 Nov;106(5):507-10. doi: 10.1263/jbb.106.507.
3
Integrating genomic data to predict transcription factor binding.整合基因组数据以预测转录因子结合
Genome Inform. 2005;16(1):83-94.
4
Analysis of Saccharomyces cerevisiae genome for the distributions of stress-response elements potentially affecting gene expression by transcriptional interference.对酿酒酵母基因组进行分析,以研究可能通过转录干扰影响基因表达的应激反应元件的分布。
In Silico Biol. 2009;9(5-6):379-89. doi: 10.3233/ISB-2009-0412.
5
Transcriptional regulatory networks in Saccharomyces cerevisiae.酿酒酵母中的转录调控网络。
Science. 2002 Oct 25;298(5594):799-804. doi: 10.1126/science.1075090.
6
Condensin binding at distinct and specific chromosomal sites in the Saccharomyces cerevisiae genome.凝缩蛋白在酿酒酵母基因组中不同且特定的染色体位点上的结合。
Mol Cell Biol. 2005 Aug;25(16):7216-25. doi: 10.1128/MCB.25.16.7216-7225.2005.
7
Evolution of a combinatorial transcriptional circuit: a case study in yeasts.一个组合转录回路的进化:以酵母为例的研究
Cell. 2003 Nov 14;115(4):389-99. doi: 10.1016/s0092-8674(03)00885-7.
8
Genome-wide transcriptional responses to sulfite in Saccharomyces cerevisiae.酿酒酵母中全基因组对亚硫酸盐的转录反应。
J Microbiol. 2008 Oct;46(5):542-8. doi: 10.1007/s12275-008-0053-y. Epub 2008 Oct 31.
9
Genome-scale gene function prediction using multiple sources of high-throughput data in yeast Saccharomyces cerevisiae.利用多种高通量数据来源对酿酒酵母进行全基因组规模的基因功能预测。
OMICS. 2004 Winter;8(4):322-33. doi: 10.1089/omi.2004.8.322.
10
Chromatin- and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome.染色质和转录相关因子在整个酿酒酵母基因组的编码区域内抑制转录。
PLoS Biol. 2008 Nov 11;6(11):e277. doi: 10.1371/journal.pbio.0060277.

引用本文的文献

1
Multiple aspects of amyloid dynamics integrate to establish prion variant dominance in yeast.淀粉样蛋白动力学的多个方面相互整合,从而在酵母中确立朊病毒变体优势。
Front Mol Neurosci. 2024 Jul 30;17:1439442. doi: 10.3389/fnmol.2024.1439442. eCollection 2024.
2
Ploidy evolution in a wild yeast is linked to an interaction between cell type and metabolism.野生酵母中的倍性进化与细胞类型和代谢之间的相互作用有关。
PLoS Biol. 2023 Nov 9;21(11):e3001909. doi: 10.1371/journal.pbio.3001909. eCollection 2023 Nov.
3
The Gene a Major Target of Transcription Factor MAT1-1-1 Encodes a Nuclear Protein Involved in Sporulation.基因是转录因子MAT1-1-1的主要作用靶点,它编码一种参与孢子形成的核蛋白。
Front Fungal Biol. 2022 Jul 14;3:937023. doi: 10.3389/ffunb.2022.937023. eCollection 2022.
4
Evolution of a new form of haploid-specific gene regulation appearing in a limited clade of ascomycete yeast species.在一个有限的子囊菌酵母物种分支中出现的一种新的单倍体特异性基因调控形式的进化。
Genetics. 2023 May 26;224(2). doi: 10.1093/genetics/iyad053.
5
Haploinsufficiency of the sex-determining genes at α restricts genome expansion in .α位点性别决定基因的单倍剂量不足限制了……中的基因组扩展。
iScience. 2022 Jul 19;25(8):104783. doi: 10.1016/j.isci.2022.104783. eCollection 2022 Aug 19.
6
Genetic analysis argues for a coactivator function for the Saccharomyces cerevisiae Tup1 corepressor.遗传分析表明,酿酒酵母 Tup1 核心抑制因子具有共激活子功能。
Genetics. 2021 Oct 2;219(2). doi: 10.1093/genetics/iyab120.
7
Post-Transcriptional Control of Mating-Type Gene Expression during Gametogenesis in .在. 的配子发生过程中,交配型基因表达的转录后调控
Biomolecules. 2021 Aug 17;11(8):1223. doi: 10.3390/biom11081223.
8
The master regulator MAT1-1-1 of fungal mating binds to its targets via a conserved motif in the human pathogen Aspergillus fumigatus.真菌交配的主调控因子 MAT1-1-1 通过人类病原体烟曲霉中的保守基序与其靶标结合。
G3 (Bethesda). 2021 Feb 9;11(2). doi: 10.1093/g3journal/jkaa012.
9
Current Perspectives on Uniparental Mitochondrial Inheritance in .关于单亲线粒体遗传的当前观点
Pathogens. 2020 Sep 10;9(9):743. doi: 10.3390/pathogens9090743.
10
Saline stress affects the pH-dependent regulation of the transcription factor PacC in the dermatophyte Trichophyton interdigitale.盐胁迫影响皮肤癣菌须癣毛癣菌中转录因子 PacC 的 pH 依赖性调控。
Braz J Microbiol. 2020 Dec;51(4):1585-1591. doi: 10.1007/s42770-020-00313-1. Epub 2020 Jun 9.

本文引用的文献

1
Combined analysis of expression data and transcription factor binding sites in the yeast genome.酵母基因组中表达数据与转录因子结合位点的联合分析。
BMC Genomics. 2004 Aug 26;5(1):59. doi: 10.1186/1471-2164-5-59.
2
Fus1p interacts with components of the Hog1p mitogen-activated protein kinase and Cdc42p morphogenesis signaling pathways to control cell fusion during yeast mating.Fus1p与Hog1p丝裂原活化蛋白激酶和Cdc42p形态发生信号通路的组分相互作用,以控制酵母交配过程中的细胞融合。
Genetics. 2004 Jan;166(1):67-77. doi: 10.1534/genetics.166.1.67.
3
ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments.染色质免疫沉淀芯片技术:全基因组染色质免疫沉淀实验的设计、分析及应用考量
Genomics. 2004 Mar;83(3):349-60. doi: 10.1016/j.ygeno.2003.11.004.
4
Unique and redundant roles for HOG MAPK pathway components as revealed by whole-genome expression analysis.全基因组表达分析揭示的HOG MAPK信号通路组分的独特和冗余作用
Mol Biol Cell. 2004 Feb;15(2):532-42. doi: 10.1091/mbc.e03-07-0521. Epub 2003 Oct 31.
5
Identification and characterization of a Candida albicans mating pheromone.白色念珠菌交配信息素的鉴定与特性分析
Mol Cell Biol. 2003 Nov;23(22):8189-201. doi: 10.1128/MCB.23.22.8189-8201.2003.
6
Finding functional features in Saccharomyces genomes by phylogenetic footprinting.通过系统发育足迹法在酿酒酵母基因组中寻找功能特征。
Science. 2003 Jul 4;301(5629):71-6. doi: 10.1126/science.1084337. Epub 2003 May 29.
7
Sequencing and comparison of yeast species to identify genes and regulatory elements.对酵母物种进行测序和比较以鉴定基因和调控元件。
Nature. 2003 May 15;423(6937):241-54. doi: 10.1038/nature01644.
8
Yeast go the whole HOG for the hyperosmotic response.酵母在高渗应激反应中全力以赴地激活高渗甘油(HOG)途径。
Trends Genet. 2002 Aug;18(8):405-12. doi: 10.1016/s0168-9525(02)02723-3.
9
NEJ1 controls non-homologous end joining in Saccharomyces cerevisiae.NEJ1在酿酒酵母中控制非同源末端连接。
Nature. 2001 Dec 6;414(6864):666-9. doi: 10.1038/414666a.
10
Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association.全基因组蛋白质-DNA关联图谱揭示Rap1的启动子特异性结合
Nat Genet. 2001 Aug;28(4):327-34. doi: 10.1038/ng569.