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亚磷酸脱氢酶活性位点残基的定点诱变

Site-directed mutagenesis of active site residues of phosphite dehydrogenase.

作者信息

Woodyer Ryan, Wheatley Joshua L, Relyea Heather A, Rimkus Stacey, van der Donk Wilfred A

机构信息

Department of Chemistry, University of Illinois at Urbana-Champaign, 600 South Mathews Avenue, Urbana, Illinois 61801, USA.

出版信息

Biochemistry. 2005 Mar 29;44(12):4765-74. doi: 10.1021/bi047868c.

Abstract

Phosphite dehydrogenase (PTDH) catalyzes the unusual oxidation of phosphite to phosphate with the concomitant reduction of NAD(+) to NADH. PTDH shares significant amino acid sequence similarity with D-hydroxy acid dehydrogenases (DHs), including strongly conserved catalytic residues His292, Glu266, and Arg237. Site-directed mutagenesis studies corroborate the essential role of His292 as all mutants of this residue were completely inactive. Histidine-selective inactivation studies with diethyl pyrocarbonate provide further evidence regarding the importance of His292. This residue is most likely the active site base that deprotonates the water nucleophile. Kinetic analysis of mutants in which Arg237 was changed to Leu, Lys, His, and Gln revealed that Arg237 is involved in substrate binding. These results agree with the typical role of this residue in D-hydroxy acid DHs. However, Glu266 does not play the typical role of increasing the pK(a) of His292 to enhance substrate binding and catalysis as the Glu266Gln mutant displayed an increased k(cat) and unchanged pH-rate profile compared to those of wild-type PTDH. The role of Glu266 is likely the positioning of His292 and Arg237 with which it forms hydrogen bonds in a homology model. Homology modeling suggests that Lys76 may also be involved in substrate binding, and this postulate is supported by mutagenesis studies. All mutants of Lys76 display reduced activity with large effects on the K(m) for phosphite, and Lys76Cys could be chemically rescued by alkylation with 2-bromoethylamine. Whereas a positively charged residue is absolutely essential for activity at the position of Arg237, Lys76 mutants that lacked a positively charged side chain still had activity, indicating that it is less important for binding and catalysis. These results highlight the versatility of nature's catalytic scaffolds, as a common framework with modest changes allows PTDH to catalyze its unusual nucleophilic displacement reaction and d-hydroxy acid DHs to oxidize alcohols to ketones.

摘要

亚磷酸脱氢酶(PTDH)催化亚磷酸向磷酸的异常氧化反应,同时将NAD(+)还原为NADH。PTDH与D-羟基酸脱氢酶(DHs)具有显著的氨基酸序列相似性,包括高度保守的催化残基His292、Glu266和Arg237。定点诱变研究证实了His292的重要作用,因为该残基的所有突变体均完全无活性。用焦碳酸二乙酯进行的组氨酸选择性失活研究进一步证明了His292的重要性。该残基很可能是使亲核水分子去质子化的活性位点碱基。对将Arg237分别替换为Leu、Lys、His和Gln的突变体进行动力学分析表明,Arg237参与底物结合。这些结果与该残基在D-羟基酸DHs中的典型作用一致。然而,Glu266并未发挥其在增加His292的pK(a)以增强底物结合和催化方面的典型作用,因为与野生型PTDH相比,Glu266Gln突变体的k(cat)增加而pH-速率曲线未变。Glu266的作用可能是在同源模型中与His292和Arg237形成氢键,从而对它们进行定位。同源建模表明,Lys76可能也参与底物结合,诱变研究支持了这一假设。Lys76的所有突变体活性均降低,对亚磷酸的K(m)有很大影响,并且Lys76Cys可用2-溴乙胺烷基化进行化学挽救。虽然在Arg237位置带正电荷的残基对活性绝对必要,但缺乏带正电荷侧链的Lys76突变体仍具有活性,这表明其对结合和催化的重要性较低。这些结果突出了自然界催化支架的多功能性,因为一个经过适度改变的共同框架使PTDH能够催化其异常的亲核取代反应,而D-羟基酸DHs则能将醇氧化为酮。

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