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酶催化效率的进化优化

Evolutionary optimization of the catalytic efficiency of enzymes.

作者信息

Pettersson G

机构信息

Avdelningen för Biokemi, Kemicentrum, Lunds Universitet, Sweden.

出版信息

Eur J Biochem. 1992 May 15;206(1):289-95. doi: 10.1111/j.1432-1033.1992.tb16927.x.

DOI:10.1111/j.1432-1033.1992.tb16927.x
PMID:1587280
Abstract
  1. The rate equation for a generalized Michaelian type of enzymic reaction mechanism has been analyzed in order to establish how the mechanism should be kinetically designed in order to optimize the catalytic efficiency of the enzyme for a given average magnitude of true and apparent first-order rate constants in the mechanism at given concentrations of enzyme, substrate and product. 2. As long as on-velocity constants for substrate and product binding to the enzyme have not reached the limiting value for a diffusion-controlled association process, the optimal state of enzyme operation will be characterized by forward (true and apparent) first-order rate constants of equal magnitude and reverse rate constants of equal magnitude. The drop in free energy driving the catalysed reaction will occur to an equal extent for each reaction step in the mechanism. All internal equilibrium constants will be of equal magnitude and reflect only the closeness of the catalysed reaction to equilibrium conditions. 3. When magnitudes of on-velocity constants for substrate and product binding have reached their upper limits, the optimal kinetic design of the reaction mechanism becomes more complex and has to be established by numerical methods. Numerical solutions, calculated for triosephosphate isomerase, indicate that this particular enzyme may or may not be considered to exhibit close to maximal efficiency, depending on what value is assigned to the upper limit for a ligand association rate constant. 4. Arguments are presented to show that no useful information on the evolutionary optimization of the catalytic efficiency of enzymes can be obtained by previously taken approaches that are based on the application of linear free-energy relationships for rate and equilibrium constants in the reaction mechanism.
摘要
  1. 为了确定在给定的酶、底物和产物浓度下,对于机制中真实和表观一级速率常数的给定平均大小,应如何从动力学角度设计广义米氏型酶促反应机制,以优化酶的催化效率,对该机制的速率方程进行了分析。2. 只要底物和产物与酶结合的正向速率常数尚未达到扩散控制缔合过程的极限值,酶操作的最佳状态将表现为正向(真实和表观)一级速率常数大小相等,逆向速率常数大小相等。驱动催化反应的自由能下降在机制中的每个反应步骤中都会以相同程度发生。所有内部平衡常数大小相等,仅反映催化反应接近平衡条件的程度。3. 当底物和产物结合的正向速率常数大小达到其上限时,反应机制的最佳动力学设计变得更加复杂,必须通过数值方法来确定。为磷酸丙糖异构酶计算的数值解表明,根据为配体缔合速率常数设定的上限值,这种特定的酶可能被认为接近最大效率,也可能不被这样认为。4. 有人提出论据表明,通过以前基于在反应机制中应用速率和平衡常数的线性自由能关系的方法,无法获得关于酶催化效率进化优化的有用信息。

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1
Evolutionary optimization of the catalytic efficiency of enzymes.酶催化效率的进化优化
Eur J Biochem. 1992 May 15;206(1):289-95. doi: 10.1111/j.1432-1033.1992.tb16927.x.
2
Why do many Michaelian enzymes exhibit an equilibrium constant close to unity for the interconversion of enzyme-bound substrate and product?为什么许多米氏酶对于酶结合底物和产物的相互转化表现出接近1的平衡常数?
Eur J Biochem. 1991 Feb 14;195(3):663-70. doi: 10.1111/j.1432-1033.1991.tb15751.x.
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Modelling, steady state analysis and optimization of the catalytic efficiency of the triosephosphate isomerase.磷酸丙糖异构酶催化效率的建模、稳态分析与优化
Bull Math Biol. 2002 Mar;64(2):301-26. doi: 10.1006/bulm.2001.0276.
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Evolutionary optimization of enzyme kinetic parameters; effect of constraints.酶动力学参数的进化优化;约束条件的影响
J Theor Biol. 1994 Dec 7;171(3):309-23. doi: 10.1006/jtbi.1994.1234.
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Optimal kinetic design of enzymes in a linear metabolic pathway.线性代谢途径中酶的最佳动力学设计
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Evolutionary optimization of the catalytic effectiveness of an enzyme.酶催化效率的进化优化。
Biochemistry. 1989 Nov 28;28(24):9293-305. doi: 10.1021/bi00450a009.
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Energy changes during the formation and interconversion of enzyme-substrate complexes.酶 - 底物复合物形成和相互转化过程中的能量变化。
Ciba Found Symp. 1975(31):69-86. doi: 10.1002/9780470720134.ch5.
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An investigation of the relationships between rate and driving force in simple uncatalysed and enzyme-catalysed reactions with applications of the findings to chemiosmotic reactions.对简单的非催化反应和酶催化反应中速率与驱动力之间的关系进行研究,并将研究结果应用于化学渗透反应。
Biochem J. 1992 Apr 15;283 ( Pt 2)(Pt 2):541-52. doi: 10.1042/bj2830541.
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Effect of evolution on the kinetic properties of enzymes.进化对酶动力学性质的影响。
Eur J Biochem. 1989 Oct 1;184(3):561-6. doi: 10.1111/j.1432-1033.1989.tb15050.x.
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Evolution of enzyme catalytic power. Characteristics of optimal catalysis evaluated for the simplest plausible kinetic model.酶催化能力的演变。针对最简单合理动力学模型评估的最佳催化特性。
Biochem J. 1977 Apr 1;163(1):111-6. doi: 10.1042/bj1630111.

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