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1
Evolution of enzyme catalytic power. Characteristics of optimal catalysis evaluated for the simplest plausible kinetic model.酶催化能力的演变。针对最简单合理动力学模型评估的最佳催化特性。
Biochem J. 1977 Apr 1;163(1):111-6. doi: 10.1042/bj1630111.
2
The pre-eminence of k(cat) in the manifestation of optimal enzymic activity delineated by using the Briggs-Haldane two-step irreversible kinetic model.通过使用布里格斯 - 霍尔丹两步不可逆动力学模型所描绘的,k(cat)在最佳酶活性表现中的卓越地位。
Biochem J. 1976 Oct 1;159(1):165-6. doi: 10.1042/bj1590165.
3
Evolutionary optimization of the catalytic efficiency of enzymes.酶催化效率的进化优化
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4
Kinetics of the hydrolysis of N-benzoyl-L-serine methyl ester catalysed by bromelain and by papain. Analysis of modifier mechanisms by lattice nomography, computational methods of parameter evaluation for substrate-activated catalyses and consequences of postulated non-productive binding in bromelain- and papain-catalysed hydrolyses.菠萝蛋白酶和木瓜蛋白酶催化N-苯甲酰-L-丝氨酸甲酯水解的动力学。通过晶格列线图分析修饰机制、底物活化催化的参数评估计算方法以及菠萝蛋白酶和木瓜蛋白酶催化水解中假定的非生产性结合的后果。
Biochem J. 1974 Aug;141(2):365-381. doi: 10.1042/bj1410365.
5
The amino-acid substituents of dipeptide substrates of cathepsin C can determine the rate-limiting steps of catalysis.糜蛋白酶 C 的二肽底物的氨基酸取代基可以决定催化的限速步骤。
Biochemistry. 2012 Sep 25;51(38):7551-68. doi: 10.1021/bi300719b. Epub 2012 Sep 13.
6
Why do many Michaelian enzymes exhibit an equilibrium constant close to unity for the interconversion of enzyme-bound substrate and product?为什么许多米氏酶对于酶结合底物和产物的相互转化表现出接近1的平衡常数?
Eur J Biochem. 1991 Feb 14;195(3):663-70. doi: 10.1111/j.1432-1033.1991.tb15751.x.
7
Evolutionary optimization of the catalytic effectiveness of an enzyme.酶催化效率的进化优化。
Biochemistry. 1989 Nov 28;28(24):9293-305. doi: 10.1021/bi00450a009.
8
The pH-dependence of second-order rate constants of enzyme modification may provide free-reactant pKa values.酶修饰二级速率常数的pH依赖性可提供游离反应物的pKa值。
Biochem J. 1977 Dec 1;167(3):859-62. doi: 10.1042/bj1670859.
9
The comparison of the estimation of enzyme kinetic parameters by fitting reaction curve to the integrated Michaelis-Menten rate equations of different predictor variables.通过将反应曲线拟合到不同预测变量的积分米氏速率方程来比较酶动力学参数的估计。
J Biochem Biophys Methods. 2005 Jan 31;62(1):13-24. doi: 10.1016/j.jbbm.2004.06.010.
10
The evolution of enzyme kinetic power.酶动力的演变。
Biochem J. 1984 Oct 15;223(2):299-303. doi: 10.1042/bj2230299.

引用本文的文献

1
Theoretical Improvements in Enzyme Efficiency Associated with Noisy Rate Constants and Increased Dissipation.与噪声速率常数和增加的耗散相关的酶效率的理论改进。
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2
Self-Organization of Enzyme-Catalyzed Reactions Studied by the Maximum Entropy Production Principle.最大熵产生原理研究酶催化反应的自组织。
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3
The evolution of enzyme kinetic power.酶动力的演变。
Biochem J. 1984 Oct 15;223(2):299-303. doi: 10.1042/bj2230299.
4
Kinetic parameters of the acyl-enzyme mechanism and conditions for quasi-equilibrium and for optimal catalytic characteristics.酰基酶机制的动力学参数以及准平衡和最佳催化特性的条件。
Biochem J. 1990 Sep 1;270(2):561-3. doi: 10.1042/bj2700561.
5
Dependence of the P2-S2 stereochemical selectivity of papain on the nature of the catalytic-site chemistry. Quantification of selectivity in the catalysed hydrolysis of the enantiomeric N-acetylphenylalanylglycine 4-nitroanilides.木瓜蛋白酶的P2-S2立体化学选择性对催化位点化学性质的依赖性。对映体N-乙酰苯丙氨酰甘氨酸4-硝基苯胺催化水解中选择性的定量分析。
Biochem J. 1990 Mar 15;266(3):653-60. doi: 10.1042/bj2660653.
6
A polyclonal antibody preparation with Michaelian catalytic properties.一种具有米氏催化特性的多克隆抗体制剂。
Biochem J. 1991 Nov 1;279 ( Pt 3)(Pt 3):871-81. doi: 10.1042/bj2790871.
7
Variation in the P2-S2 stereochemical selectivity towards the enantiomeric N-acetylphenylalanylglycine 4-nitroanilides among the cysteine proteinases papain, ficin and actinidin.半胱氨酸蛋白酶木瓜蛋白酶、无花果蛋白酶和猕猴桃蛋白酶对映体N-乙酰苯丙氨酰甘氨酸4-硝基苯胺的P2-S2立体化学选择性差异。
Biochem J. 1992 Jan 15;281 ( Pt 2)(Pt 2):553-9. doi: 10.1042/bj2810553.
8
Kinetic barriers under steady-state conditions.稳态条件下的动力学屏障。
Biochem J. 1992 May 15;284 ( Pt 1)(Pt 1):213-9. doi: 10.1042/bj2840213.
9
Generalized microscopic reversibility, kinetic co-operativity of enzymes and evolution.广义微观可逆性、酶的动力学协同性与进化
Biochem J. 1978 Dec 1;175(3):779-91. doi: 10.1042/bj1750779.

本文引用的文献

1
A Note on the Kinetics of Enzyme Action.关于酶作用动力学的注释
Biochem J. 1925;19(2):338-9. doi: 10.1042/bj0190338.
2
THE inhibition of chymotrypsin by diethyl p-nitrophenyl phosphate.对硝基苯基磷酸二乙酯对胰凝乳蛋白酶的抑制作用。
Biochem J. 1952 Mar;50(5):672-8. doi: 10.1042/bj0500672.
3
The reaction of p-nitrophenyl esters with chymotrypsin and insulin.对硝基苯酯与胰凝乳蛋白酶和胰岛素的反应。
Biochem J. 1954 Feb;56(2):288-97. doi: 10.1042/bj0560288.
4
The molecular variations of cytochrome c as a function of the evolution of species.作为物种进化函数的细胞色素c的分子变异。
Harvey Lect. 1971;66:177-247.
5
Gluconeogenesis in rat liver cytosol. I. Computer analysis of experimental data.大鼠肝细胞溶胶中的糖异生作用。I. 实验数据的计算机分析
Comput Biomed Res. 1971 Apr;4(1):65-106. doi: 10.1016/0010-4809(71)90047-4.
6
Catalysis, binding and enzyme-substrate complementarity.催化、结合与酶-底物互补性。
Proc R Soc Lond B Biol Sci. 1974 Nov 19;187(1089):397-407. doi: 10.1098/rspb.1974.0084.
7
The quantitative relations between diffusion-controlled reaction rate and characteristic parameters in enzyme-substrate reaction systems. I. Neutral substrates.酶-底物反应体系中扩散控制反应速率与特征参数之间的定量关系。I. 中性底物。
Sci Sin. 1976 Jan-Feb;19(1):117-36.
8
Studies of energy transport in heart cells. The functional coupling between mitochondrial creatine phosphokinase and ATP ADP translocase: kinetic evidence.心脏细胞能量转运的研究。线粒体肌酸磷酸激酶与ATP-ADP转位酶之间的功能偶联:动力学证据。
Arch Biochem Biophys. 1976 Mar;173(1):34-41. doi: 10.1016/0003-9861(76)90231-9.
9
The effect of natural selection on enzymic catalysis.自然选择对酶催化作用的影响。
J Mol Biol. 1976 Feb 15;101(1):1-9. doi: 10.1016/0022-2836(76)90062-0.
10
Whither enzyme mechanisms?酶机制何去何从?
FEBS Lett. 1976 Feb 4;62(SUPPL):E53-61. doi: 10.1016/0014-5793(76)80854-x.

酶催化能力的演变。针对最简单合理动力学模型评估的最佳催化特性。

Evolution of enzyme catalytic power. Characteristics of optimal catalysis evaluated for the simplest plausible kinetic model.

作者信息

Brocklehurst K

出版信息

Biochem J. 1977 Apr 1;163(1):111-6. doi: 10.1042/bj1630111.

DOI:10.1042/bj1630111
PMID:869911
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1164665/
Abstract
  1. Evolutionary changes in the structure of an enzyme that provide an increase in its K(m) value are considered. Provided that K(m) increases as a result of increases in the forward rate constants of the catalysis relative to the reverse rate constants, the enzyme catalyses the conversion of a fixed concentration of its substrate more rapidly when its structure provides that K(m)>[S] than when K(m)<[S]. 2. Catalytic efficiency of enzymes is discussed in terms of the simplest plausible model, the Haldane [(1930) Enzymes, Longmans, London] reversible three-step model: [Formula: see text] The rate equation for the forward reaction of this model (formation of P) may be written in the simple form: [Formula: see text] K(eq.) is the equilibrium constant (=P/S), and k(cat.)=V/E, where E is the total enzyme concentration. 3. To assess the effectiveness of an enzyme, it is necessary only to determine the extent to which the constraints of a particular kinetic mechanism permit v(2) (v when K(m)>>[S]) to approach v(d) (the diffusion-limited rate). 4. The value of the optimal rate of catalysis (v(opt.), the maximal value of v(2)) is dictated by the equilibrium constant for the reaction, K(eq.); v(2)=v(d)/a, where [Formula: see text] when k(+1) is assumed equal to k(-3), and v(opt.)=v(d)/a(min.). When K(eq.)>/=1, it is necessary that k(+2)>>k(-1) for a to take its minimum value, a(min.); when K(eq.)<<1, it is necessary only that k(+2)>>K(eq.).k(-1), i.e. a can equal a(min.) even if k(+2)<k(-1). When K(eq.)>>1, v(opt.)=v(d); when K(eq.)=1, v(opt.)=v(d)/2, and when K(eq.)<<1, v(opt.)=K(eq.).v(d). 5. The analysis, together with predicted effects of evolutionary pressure, suggests that in practice the rates of the fastest enzyme-catalysed freely reversible reactions might be expected to be lower than the value of k(+1)E[S] by about an order of magnitude, particularly if K(eq.)<1. 6. The existing literature suggests that, in general, appropriate values of K(m) have evolved for the provision of high rates of catalysis but that many values of k(cat.) are not large enough to provide optimal rates of catalysis unless the value of k(+1)in vivo is lower than its value in free solution.
摘要
  1. 考虑酶结构的进化变化,这些变化会使其米氏常数(K(m))值增加。倘若K(m)因催化正向速率常数相对于逆向速率常数增加而增大,那么当酶结构使得K(m)>[S]时,酶催化固定浓度底物的转化比K(m)<[S]时更快。2. 依据最简单合理模型——霍尔丹([(1930)《酶》,朗文斯出版社,伦敦])可逆三步模型,讨论酶的催化效率:[公式:见原文]此模型正向反应(生成P)的速率方程可写成简单形式:[公式:见原文]K(eq.)是平衡常数(=P/S),k(cat.)=V/E,其中E是总酶浓度。3. 要评估一种酶的有效性,只需确定特定动力学机制的限制在多大程度上允许v(2)(当K(m)>>[S]时的v)接近v(d)(扩散限制速率)。4. 最佳催化速率(v(opt.),v(2)的最大值)由反应的平衡常数K(eq.)决定;v(2)=v(d)/a,其中[公式:见原文]当假设k(+1)等于k(-3)时,v(opt.)=v(d)/a(min.)。当K(eq.)≥1时,要使a取最小值a(min.),必须k(+2)>>k(-1);当K(eq.)<<1时,只需k(+2)>>K(eq.).k(-1),即即便k(+2)<k(-1),a也可等于a(min.)。当K(eq.)>>1时,v(opt.)=v(d);当K(eq.)=1时,v(opt.)=v(d)/2,当K(eq.)<<1时,v(opt.)=K(eq.).v(d)。5. 该分析以及进化压力的预测效应表明,实际上,最快的酶催化自由可逆反应的速率可能比k(+1)E[S]的值低大约一个数量级,特别是当K(eq.)<1时。6. 现有文献表明,一般而言,已进化出合适的K(m)值以实现高催化速率,但许多k(cat.)值不够大,无法提供最佳催化速率,除非体内k(+1)的值低于其在自由溶液中的值。