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进化对酶动力学性质的影响。

Effect of evolution on the kinetic properties of enzymes.

作者信息

Pettersson G

机构信息

Avdelningen för Biokemi, Kemicentrum, Lunds Universitet, Sweden.

出版信息

Eur J Biochem. 1989 Oct 1;184(3):561-6. doi: 10.1111/j.1432-1033.1989.tb15050.x.

DOI:10.1111/j.1432-1033.1989.tb15050.x
PMID:2806240
Abstract
  1. The likely effect of a selective pressure in the direction of higher reaction fluxes on rate parameters for enzyme reactions confirming to Michaelis-Menten kinetics has been analyzed on the basis of relationships which take into account the changes in metabolite concentrations that must be associated with mutational changes of the kinetic properties of enzymes participating in metabolic pathways. 2. Arguments are presented to show that such a pressure should tend to increase kcat, whereas Km may decrease or increase depending on what stage of evolutionary development the enzyme has reached. While the early evolution of enzymes must have been associated with decreasing Km values, an increase of both kcat and Km is mandatory for enhancement of the rate performance of extensively developed enzymes which exhibit kcat/Km ratios approaching the diffusion-control limit. The latter limit is dependent on the equilibrium constant for the catalysed reaction. 3. Enzymes which have reached the diffusion-control limit for their second-order rate performance cannot be considered as perfectly evolved catalysts, but may well undergo further development towards a higher catalytic efficiency in response to the improvement of other enzymes in the metabolic pathway with regard to the criterion of an enhanced reaction flux. Such evolution is associated with an increase of the metabolite levels in the pathway, and a simple model system is examined in order to illustrate the ultimate limits for the metabolite levels and reaction flux that may obtain. 4. The theoretical evidence presented lends no support to previous proposals that certain enzymes (e.g. triosephosphate isomerase), or enzymes showing certain kinetic characteristics (e.g. kcat/Km quotients approaching 10(9) s-1 M-1), have reached the end of their evolutionary development. A claim that any specific enzyme has reached catalytic perfection would provide the unreasonable inference that all enzymes participating in intermediary metabolism have reached catalytic perfection.
摘要
  1. 基于一些关系,对朝着更高反应通量方向的选择压力对符合米氏动力学的酶促反应速率参数的可能影响进行了分析,这些关系考虑了代谢物浓度的变化,而代谢物浓度的变化必然与参与代谢途径的酶的动力学性质的突变变化相关。2. 文中提出的观点表明,这种压力应倾向于增加kcat,而Km可能会降低或增加,这取决于酶已达到进化发展的哪个阶段。虽然酶的早期进化必然与Km值的降低有关,但对于已充分发展且kcat/Km比值接近扩散控制极限的酶,为提高其速率性能,kcat和Km都必须增加。后者的极限取决于催化反应的平衡常数。3. 对于其二级速率性能已达到扩散控制极限的酶,不能被视为完美进化的催化剂,但为了提高代谢途径中其他酶的反应通量标准,它们很可能会朝着更高的催化效率进一步发展。这种进化与途径中代谢物水平的增加相关,并且研究了一个简单的模型系统以说明可能达到的代谢物水平和反应通量的最终极限。4. 所提出的理论证据不支持先前的提议,即某些酶(如磷酸丙糖异构酶)或显示某些动力学特征(如kcat/Km商接近10^9 s^-1 M^-1)的酶已达到其进化发展的终点。声称任何特定酶已达到催化完美状态将提供不合理的推断,即参与中间代谢的所有酶都已达到催化完美状态。

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