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使用一种新的时间和灵敏度最优实验检测蛋白质中的C',Calpha相关性。

Detection of C',Calpha correlations in proteins using a new time- and sensitivity-optimal experiment.

作者信息

Lee Donghan, Vögeli Beat, Pervushin Konstantin

机构信息

Laboratory of Physical Chemistry, ETH Hönggerberg, HCI, Zürich, Switzerland.

出版信息

J Biomol NMR. 2005 Apr;31(4):273-8. doi: 10.1007/s10858-005-2361-4.

Abstract

Sensitivity- and time-optimal experiment, called COCAINE (CO-CA In- and aNtiphase spectra with sensitivity Enhancement), is proposed to correlate chemical shifts of (13)C' and (13)C(alpha) spins in proteins. A comparison of the sensitivity and duration of the experiment with the corresponding theoretical unitary bounds shows that the COCAINE experiment achieves maximum possible transfer efficiency in the shortest possible time, and in this sense the sequence is optimal. Compared to the standard HSQC, the COCAINE experiment delivers a 2.7-fold gain in sensitivity. This newly proposed experiment can be used for assignment of backbone resonances in large deuterated proteins effectively bridging (13)C' and (13)C(alpha) resonances in adjacent amino acids. Due to the spin-state selection employed, the COCAINE experiment can also be used for efficient measurements of one-bond couplings (e.g. scalar and residual dipolar couplings) in any two-spin system (e.g. the N/H in the backbone of protein).

摘要

提出了一种灵敏度和时间最优的实验,称为COCAINE(具有灵敏度增强的同相和反相碳-13光谱),用于关联蛋白质中碳-13′和碳-13α自旋的化学位移。将该实验的灵敏度和持续时间与相应的理论单位界限进行比较表明,COCAINE实验在尽可能短的时间内实现了最大可能的转移效率,从这个意义上说该序列是最优的。与标准HSQC相比,COCAINE实验的灵敏度提高了2.7倍。这个新提出的实验可有效地用于大氘代蛋白质中主链共振的归属,桥接相邻氨基酸中的碳-13′和碳-13α共振。由于采用了自旋态选择,COCAINE实验还可用于在任何双自旋系统(如蛋白质主链中的氮/氢)中高效测量一键耦合(如标量和剩余偶极耦合)。

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