Yoon Jung-Hoon, Kim In-Gi, Lee Mi-Hwa, Oh Tae-Kwang
Korea Research Institute of Bioscience and Biotechnology (KRIBB), PO Box 115, Yusong, Taejon, Korea.
Int J Syst Evol Microbiol. 2005 Jul;55(Pt 4):1611-1614. doi: 10.1099/ijs.0.63631-0.
Three Gram-positive, rod- or coccoid-shaped bacterial strains, KSL-2(T), KSL-5 and KSL-6, were isolated from an alkaline soil in Korea and subjected to a polyphasic taxonomical analysis. These isolates grew optimally at pH 9.0 and 30 degrees C. They were characterized chemotaxonomically as having cell wall peptidoglycan based on ll-2,6-diaminopimelic acid, MK-8(H(4)) as the predominant menaquinone and iso-C(16:0) as the major fatty acid. The DNA G+C content of the isolates was 73-74 mol%. Strains KSL-2(T), KSL-5 and KSL-6 were identical in their 16S rRNA gene sequences and exhibited DNA-DNA relatedness values of 88-93%. Phylogenetic trees based on 16S rRNA gene sequences showed that the three isolates fell within the evolutionary radiation encompassed by the genus Nocardioides. Levels of 16S rRNA gene sequence similarity between the three strains and the type strains of Nocardioides species ranged from 93.6% (with Nocardioides albus) to 97.2% (with Nocardioides aquiterrae). DNA-DNA relatedness levels between the three isolates and N. aquiterrae CJ-14(T) were 8-15%. On the basis of phenotypic, phylogenetic and genetic data, strains KSL-2(T), KSL-5 and KSL-6 were classified in the genus Nocardioides as members of a novel species for which the name Nocardioides kribbensis sp. nov. is proposed, with KSL-2(T) (=KCTC 19038(T)=DSM 16314(T)) as the type strain.
从韩国碱性土壤中分离出三株革兰氏阳性、杆状或球状细菌菌株,KSL-2(T)、KSL-5和KSL-6,并对其进行了多相分类分析。这些分离株在pH 9.0和30℃下生长最佳。它们在化学分类学上的特征是具有基于ll-2,6-二氨基庚二酸的细胞壁肽聚糖,以MK-8(H(4))作为主要甲基萘醌,以异-C(16:0)作为主要脂肪酸。分离株的DNA G+C含量为73-74 mol%。菌株KSL-2(T)、KSL-5和KSL-6的16S rRNA基因序列相同,DNA-DNA相关性值为88-93%。基于16S rRNA基因序列的系统发育树表明,这三株分离株属于诺卡氏菌属所涵盖的进化辐射范围内。这三株菌株与诺卡氏菌属各模式菌株的16S rRNA基因序列相似性水平在93.6%(与白色诺卡氏菌)至97.2%(与水生诺卡氏菌)之间。这三株分离株与水生诺卡氏菌CJ-14(T)的DNA-DNA相关性水平为8-15%。基于表型、系统发育和遗传数据,菌株KSL-2(T)、KSL-5和KSL-6被归类为诺卡氏菌属的一个新物种成员,为此提出了新名称诺卡氏菌Kribbensis sp. nov.,以KSL-2(T)(=KCTC 19038(T)=DSM 16314(T))作为模式菌株。