Lundström Patrik, Akke Mikael
Department of Biophysical Chemistry, Lund University, P.O.Box 124, 22100 Lund, Sweden.
Chembiochem. 2005 Sep;6(9):1685-92. doi: 10.1002/cbic.200500086.
NMR spin relaxation in the rotating frame (R1rho) is a unique method for atomic-resolution characterization of conformational (chemical) exchange processes occurring on the microsecond timescale. We present a rotating-frame 13C(alpha) relaxation dispersion experiment for measuring conformational dynamics in uniformly 13C-labeled proteins. The experiment was validated by using the E140Q mutant of the C-terminal fragment of calmodulin, which exhibits significant conformational exchange between two major conformations, as gauged from previous 15N and 1H relaxation studies. Consistent with previous work, the present 13C(alpha) R1rho experiment detects conformational-exchange dynamics throughout the protein. The average correlation time of <tau(ex)>=25+/-8 micros is in excellent agreement with those determined previously from 1H and 15N R1rho relaxation data: <tau(ex)>=19+/-7 and 21+/-3 micros, respectively. The extracted chemical-shift differences between the exchanging states reveal significant fluctuations in dihedral angles within single regions of Ramachandran phi-psi space, that were not identified from the 1H and 15N relaxation data. The present results underscore the advantage of using several types of nuclei to probe exchange dynamics in biomolecules.
旋转坐标系中的核磁共振自旋弛豫(R1rho)是一种独特的方法,可用于在微秒时间尺度上对构象(化学)交换过程进行原子分辨率表征。我们提出了一种旋转坐标系13C(α)弛豫色散实验,用于测量均匀13C标记蛋白质中的构象动力学。通过使用钙调蛋白C端片段的E140Q突变体对该实验进行了验证,根据先前的15N和1H弛豫研究,该突变体在两种主要构象之间表现出显著的构象交换。与先前的工作一致,目前的13C(α)R1rho实验检测到了整个蛋白质中的构象交换动力学。<τ(ex)>=25±8微秒的平均相关时间与先前从1H和15N R1rho弛豫数据确定的结果非常一致:分别为<τ(ex)>=19±7和21±3微秒。交换态之间提取的化学位移差异揭示了拉马钱德兰φ-ψ空间单个区域内二面角的显著波动,这是从1H和15N弛豫数据中未识别出来的。目前的结果强调了使用几种类型的原子核来探测生物分子中交换动力学的优势。