• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

一种使用观测多阶段质谱库鉴定寡糖结构的策略。

A strategy for identification of oligosaccharide structures using observational multistage mass spectral library.

作者信息

Kameyama Akihiko, Kikuchi Norihiro, Nakaya Shuuichi, Ito Hiromi, Sato Takashi, Shikanai Toshihide, Takahashi Yoriko, Takahashi Katsutoshi, Narimatsu Hisashi

机构信息

Research Center for Glycoscience, National Institute of Advanced Industrial Science and Technology, Tsukuba, Ibaraki 305-8568, Japan.

出版信息

Anal Chem. 2005 Aug 1;77(15):4719-25. doi: 10.1021/ac048350h.

DOI:10.1021/ac048350h
PMID:16053281
Abstract

Glycosylation is the most widespread posttranslational modification in eukaryotes; however, the role of oligosaccharides attached to proteins has been little studied because of the lack of a sensitive and easy analytical method for oligosaccharide structures. Recently, tandem mass spectrometric techniques have been revealing that oligosaccharides might have characteristic signal intensity profiles. We describe here a strategy for the rapid and accurate identification of the oligosaccharide structures on glycoproteins using only mass spectrometry. It is based on a comparison of the signal intensity profiles of multistage tandem mass (MSn) spectra between the analyte and a library of observational mass spectra acquired from structurally defined oligosaccharides prepared using glycosyltransferases. To smartly identify the oligosaccharides released from biological materials, a computer suggests which ion among the fragment ions in the MS/MS spectrum should yield the most informative MS3 spectrum to distinguish similar oligosaccharides. Using this strategy, we were able to identify the structure of N-linked oligosaccharides in immunoglobulin G as an example.

摘要

糖基化是真核生物中最普遍的翻译后修饰;然而,由于缺乏一种灵敏且简便的寡糖结构分析方法,附着在蛋白质上的寡糖的作用鲜有研究。最近,串联质谱技术已揭示出寡糖可能具有特征性的信号强度谱。我们在此描述一种仅使用质谱就能快速准确鉴定糖蛋白上寡糖结构的策略。它基于分析物与从使用糖基转移酶制备的结构明确的寡糖获得的观测质谱库之间的多级串联质谱(MSn)谱的信号强度谱比较。为了巧妙地鉴定从生物材料中释放的寡糖,计算机可提示MS/MS谱中的碎片离子中哪个离子应产生信息量最大的MS3谱以区分相似的寡糖。以免疫球蛋白G中的N - 连接寡糖结构鉴定为例,我们利用此策略成功实现了结构鉴定。

相似文献

1
A strategy for identification of oligosaccharide structures using observational multistage mass spectral library.一种使用观测多阶段质谱库鉴定寡糖结构的策略。
Anal Chem. 2005 Aug 1;77(15):4719-25. doi: 10.1021/ac048350h.
2
Tandem mass spectra of glycan substructures enable the multistage mass spectrometric identification of determinants on oligosaccharides.糖链亚结构的串联质谱能够实现寡糖上决定簇的多级质谱鉴定。
Rapid Commun Mass Spectrom. 2013 May 15;27(9):931-9. doi: 10.1002/rcm.6527.
3
Strategy for simulation of CID spectra of N-linked oligosaccharides toward glycomics.用于糖组学的N-连接寡糖CID光谱模拟策略
J Proteome Res. 2006 Apr;5(4):808-14. doi: 10.1021/pr0503937.
4
Characterization of a gel-separated unknown glycoprotein by liquid chromatography/multistage tandem mass spectrometry: analysis of rat brain Thy-1 separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis.通过液相色谱/多级串联质谱对凝胶分离的未知糖蛋白进行表征:对经十二烷基硫酸钠-聚丙烯酰胺凝胶电泳分离的大鼠脑Thy-1的分析
J Chromatogr A. 2005 Nov 11;1094(1-2):105-17. doi: 10.1016/j.chroma.2005.07.100. Epub 2005 Oct 5.
5
Automated structural assignment of derivatized complex N-linked oligosaccharides from tandem mass spectra.通过串联质谱对衍生化的复杂 N-连接寡糖进行自动结构解析
Rapid Commun Mass Spectrom. 2002;16(18):1743-54. doi: 10.1002/rcm.779.
6
Assignment and quantification of 2-aminopyridine derivatized oligosaccharide isomers coeluted on reversed-phase HPLC/MS by MSn spectral library.通过MSn光谱库对反相HPLC/MS上共洗脱的2-氨基吡啶衍生化寡糖异构体进行分配和定量。
Anal Chem. 2004 Dec 15;76(24):7294-303. doi: 10.1021/ac0493166.
7
Structural analysis of sialyl N-glycan using pyridylamination and chromatography followed by multistage tandem mass spectrometry.使用吡啶基化和色谱法,随后进行多级串联质谱分析唾液酸N-聚糖的结构。
Methods Enzymol. 2006;415:87-103. doi: 10.1016/S0076-6879(06)15006-5.
8
Structural assignment of isomeric 2-aminopyridine-derivatized monosialylated biantennary N-linked oligosaccharides using negative-ion multistage tandem mass spectral matching.使用负离子多级串联质谱匹配对异构的2-氨基吡啶衍生化单唾液酸化双触角N-连接寡糖进行结构鉴定
Rapid Commun Mass Spectrom. 2006;20(3):412-8. doi: 10.1002/rcm.2320.
9
N-linked oligosaccharide analysis of rat brain Thy-1 by liquid chromatography with graphitized carbon column/ion trap-Fourier transform ion cyclotron resonance mass spectrometry in positive and negative ion modes.采用液相色谱结合石墨化碳柱/离子阱-傅里叶变换离子回旋共振质谱在正离子和负离子模式下对大鼠脑Thy-1进行N-连接寡糖分析。
J Chromatogr A. 2006 Jan 27;1103(2):296-306. doi: 10.1016/j.chroma.2005.11.043. Epub 2005 Dec 20.
10
Multistage mass spectrometric sequencing of keratan sulfate-related oligosaccharides.硫酸角质素相关寡糖的多级质谱测序
Anal Chem. 2006 Feb 1;78(3):891-900. doi: 10.1021/ac051359e.

引用本文的文献

1
Plants Metabolome Study: Emerging Tools and Techniques.植物代谢组学研究:新兴工具与技术
Plants (Basel). 2021 Nov 8;10(11):2409. doi: 10.3390/plants10112409.
2
Putting the pieces together: mapping the O-glycoproteome.将各部分组合起来:绘制 O-糖蛋白组图谱。
Curr Opin Biotechnol. 2021 Oct;71:130-136. doi: 10.1016/j.copbio.2021.07.006. Epub 2021 Aug 4.
3
Databases and Bioinformatic Tools for Glycobiology and Glycoproteomics.数据库和生物信息学工具在糖生物学和糖蛋白质组学中的应用。
Int J Mol Sci. 2020 Sep 14;21(18):6727. doi: 10.3390/ijms21186727.
4
Advancing Solutions to the Carbohydrate Sequencing Challenge.推进碳水化合物测序挑战解决方案。
J Am Chem Soc. 2019 Sep 18;141(37):14463-14479. doi: 10.1021/jacs.9b06406. Epub 2019 Aug 21.
5
Lectin-Based Assay for Glycoform-Specific Detection of α2,6-sialylated Transferrin and Carcinoembryonic Antigen in Tissue and Body Fluid.基于凝集素的方法用于糖型特异性检测组织和体液中的 α2,6-唾液酸化转铁蛋白和癌胚抗原。
Molecules. 2018 May 30;23(6):1314. doi: 10.3390/molecules23061314.
6
Fragmentation of Oligosaccharides from Sodium Adduct Molecules Depends on the Position of -Acetyl Hexosamine Residue in Their Sequences in Mass Spectrometry.质谱分析中,来自钠加合物分子的寡糖片段化取决于其序列中N-乙酰己糖胺残基的位置。
Mass Spectrom (Tokyo). 2017;6(Spec Iss 2):S0073. doi: 10.5702/massspectrometry.S0073. Epub 2017 Sep 22.
7
Extending a Tandem Mass Spectral Library to Include MS Spectra of Fragment Ions Produced In-Source and MS Spectra.将串联质谱文库扩展到包括在源内产生的碎片离子的 MS 谱和 MS 谱。
J Am Soc Mass Spectrom. 2017 Nov;28(11):2280-2287. doi: 10.1007/s13361-017-1748-2. Epub 2017 Jul 18.
8
Identification of sperm equatorial segment protein 1 in the acrosome as the primary binding target of peanut agglutinin (PNA) in the mouse testis.鉴定顶体中精子赤道段蛋白1为小鼠睾丸中花生凝集素(PNA)的主要结合靶点。
Histochem Cell Biol. 2017 Jan;147(1):27-38. doi: 10.1007/s00418-016-1478-8. Epub 2016 Aug 18.
9
Computational approaches to define a human milk metaglycome.定义人乳糖组的计算方法。
Bioinformatics. 2016 May 15;32(10):1471-8. doi: 10.1093/bioinformatics/btw048. Epub 2016 Jan 23.
10
Algorithms and design strategies towards automated glycoproteomics analysis.用于自动化糖蛋白质组学分析的算法和设计策略。
Mass Spectrom Rev. 2017 Jul;36(4):475-498. doi: 10.1002/mas.21487. Epub 2016 Jan 4.