Schuster Stefan, Kenanov Dimitar
Department of Bioinformatics, Friedrich Schiller University, Jena, Germany.
FEBS J. 2005 Oct;272(20):5278-90. doi: 10.1111/j.1742-4658.2005.04924.x.
This article is devoted to the study of redundancy and yield of salvage pathways in human erythrocytes. These cells are not able to synthesize ATP de novo. However, the salvage (recycling) of certain nucleosides or bases to give nucleotide triphosphates is operative. As the salvage pathways use enzymes consuming ATP as well as enzymes producing ATP, it is not easy to see whether a net synthesis of ATP is possible. As for pathways using adenosine, a straightforward assumption is that these pathways start with adenosine kinase. However, a pathway bypassing this enzyme and using S-adenosylhomocysteine hydrolase instead was reported. So far, this route has not been analysed in detail. Using the concept of elementary flux modes, we investigate theoretically which salvage pathways exist in erythrocytes, which enzymes belong to each of these and what relative fluxes these enzymes carry. Here, we compute the net overall stoichiometry of ATP build-up from the recycled substrates and show that the network has considerable redundancy. For example, four different pathways of adenine salvage and 12 different pathways of adenosine salvage are obtained. They give different ATP/glucose yields, the highest being 3:10 for adenine salvage and 2:3 for adenosine salvage provided that adenosine is not used as an energy source. Implications for enzyme deficiencies are discussed.
本文致力于研究人类红细胞中补救途径的冗余性和产量。这些细胞无法从头合成ATP。然而,某些核苷或碱基的补救(再循环)以生成三磷酸核苷酸的过程是可行的。由于补救途径既使用消耗ATP的酶,也使用产生ATP的酶,因此很难判断是否可能实现ATP的净合成。至于使用腺苷的途径,一个直接的假设是这些途径从腺苷激酶开始。然而,有报道称存在一条绕过该酶而使用S-腺苷同型半胱氨酸水解酶的途径。到目前为止,这条途径尚未得到详细分析。利用基本通量模式的概念,我们从理论上研究了红细胞中存在哪些补救途径,这些途径分别属于哪些酶,以及这些酶携带的相对通量是多少。在这里,我们计算了由回收底物生成ATP的净总体化学计量,并表明该网络具有相当大的冗余性。例如,我们得到了四种不同的腺嘌呤补救途径和12种不同的腺苷补救途径。它们产生不同的ATP/葡萄糖产量,在不将腺苷用作能量来源的情况下,腺嘌呤补救的最高产量为3:10,腺苷补救的最高产量为2:3。我们还讨论了酶缺陷的影响。