• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

多个高级量子力学/分子力学反应路径证明了分支酸变位酶中的过渡态稳定:势垒高度与过渡态稳定的相关性。

Multiple high-level QM/MM reaction paths demonstrate transition-state stabilization in chorismate mutase: correlation of barrier height with transition-state stabilization.

作者信息

Claeyssens Frederik, Ranaghan Kara E, Manby Frederick R, Harvey Jeremy N, Mulholland Adrian J

机构信息

School of Chemistry, University of Bristol, Bristol, UK.

出版信息

Chem Commun (Camb). 2005 Oct 28(40):5068-70. doi: 10.1039/b508181e. Epub 2005 Sep 7.

DOI:10.1039/b508181e
PMID:16220173
Abstract

Multiple profiles for the reaction from chorismate to prephenate in the enzyme chorismate mutase calculated with hybrid density functional combined quantum mechanics/molecular mechanics methods (B3LYP/6-31G(d)-CHARMM27) agree well with experiment, and provide direct evidence of transition-state stabilization by this important enzyme, which is at the centre of current debates about the nature of enzyme catalysis.

摘要

采用混合密度泛函组合量子力学/分子力学方法(B3LYP/6-31G(d)-CHARMM27)计算得到的分支酸变位酶中从分支酸到预苯酸反应的多个反应剖面图与实验结果吻合良好,并为这种重要酶对过渡态的稳定作用提供了直接证据,而该酶处于当前关于酶催化本质争论的核心位置。

相似文献

1
Multiple high-level QM/MM reaction paths demonstrate transition-state stabilization in chorismate mutase: correlation of barrier height with transition-state stabilization.多个高级量子力学/分子力学反应路径证明了分支酸变位酶中的过渡态稳定:势垒高度与过渡态稳定的相关性。
Chem Commun (Camb). 2005 Oct 28(40):5068-70. doi: 10.1039/b508181e. Epub 2005 Sep 7.
2
Transition state stabilization and substrate strain in enzyme catalysis: ab initio QM/MM modelling of the chorismate mutase reaction.酶催化中的过渡态稳定化与底物应变:分支酸变位酶反应的从头算量子力学/分子力学建模
Org Biomol Chem. 2004 Apr 7;2(7):968-80. doi: 10.1039/b313759g. Epub 2004 Mar 3.
3
Differential transition-state stabilization in enzyme catalysis: quantum chemical analysis of interactions in the chorismate mutase reaction and prediction of the optimal catalytic field.酶催化中的差异过渡态稳定化:分支酸变位酶反应中相互作用的量子化学分析及最佳催化场的预测
J Am Chem Soc. 2004 Dec 15;126(49):16148-59. doi: 10.1021/ja049376t.
4
A comparative study of claisen and cope rearrangements catalyzed by chorismate mutase. An insight into enzymatic efficiency: transition state stabilization or substrate preorganization?分支酸变位酶催化的克莱森重排和科普重排的比较研究。对酶效率的深入了解:过渡态稳定还是底物预组织?
J Am Chem Soc. 2004 Jan 14;126(1):311-9. doi: 10.1021/ja0369156.
5
Analysis of chorismate mutase catalysis by QM/MM modelling of enzyme-catalysed and uncatalysed reactions.通过酶催化和非催化反应的QM/MM 建模分析分支酸变位酶的催化作用。
Org Biomol Chem. 2011 Mar 7;9(5):1578-90. doi: 10.1039/c0ob00691b. Epub 2011 Jan 18.
6
A definitive mechanism for chorismate mutase.分支酸变位酶的确定机制。
Biochemistry. 2005 Aug 9;44(31):10443-8. doi: 10.1021/bi050886p.
7
The monofunctional chorismate mutase from Bacillus subtilis. Structure determination of chorismate mutase and its complexes with a transition state analog and prephenate, and implications for the mechanism of the enzymatic reaction.来自枯草芽孢杆菌的单功能分支酸变位酶。分支酸变位酶及其与过渡态类似物和预苯酸复合物的结构测定,以及对酶促反应机制的启示。
J Mol Biol. 1994 Jul 29;240(5):476-500. doi: 10.1006/jmbi.1994.1462.
8
Contributions of conformational compression and preferential transition state stabilization to the rate enhancement by chorismate mutase.分支酸变位酶通过构象压缩和优先稳定过渡态对速率增强的贡献。
J Am Chem Soc. 2003 Jun 11;125(23):6892-9. doi: 10.1021/ja021424r.
9
A transition path sampling study of the reaction catalyzed by the enzyme chorismate mutase.对分支酸变位酶催化反应的过渡路径抽样研究。
J Phys Chem B. 2007 May 24;111(20):5708-18. doi: 10.1021/jp067629u. Epub 2007 May 3.
10
Multiple-steering QM-MM calculation of the free energy profile in chorismate mutase.分支酸变位酶中自由能分布的多导向量子力学-分子力学计算
J Am Chem Soc. 2005 May 18;127(19):6940-1. doi: 10.1021/ja0452830.

引用本文的文献

1
How Human TET2 Enzyme Catalyzes the Oxidation of Unnatural Cytosine Modifications in Double-Stranded DNA.人类TET2酶如何催化双链DNA中非天然胞嘧啶修饰的氧化反应。
ACS Catal. 2022 May 6;12(9):5327-5344. doi: 10.1021/acscatal.2c00024. Epub 2022 Apr 19.
2
QM/MM Simulations with the Gaussian Electrostatic Model: A Density-based Polarizable Potential.基于高斯静电模型的量子力学/分子力学模拟:一种基于密度的可极化势
J Phys Chem Lett. 2018 Jun 7;9(11):3062-3067. doi: 10.1021/acs.jpclett.8b01412. Epub 2018 May 23.
3
Mechanistic Insights into the Reaction of Chlorination of Tryptophan Catalyzed by Tryptophan 7-Halogenase.
色氨酸 7-卤代酶催化色氨酸氯化反应的机理研究。
Sci Rep. 2017 Dec 12;7(1):17395. doi: 10.1038/s41598-017-17789-x.
4
Quantum chemical modeling of the reaction path of chorismate mutase based on the experimental substrate/product complex.基于实验性底物/产物复合物的分支酸变位酶反应路径的量子化学建模。
FEBS Open Bio. 2017 May 2;7(6):789-797. doi: 10.1002/2211-5463.12224. eCollection 2017 Jun.
5
With or without light: comparing the reaction mechanism of dark-operative protochlorophyllide oxidoreductase with the energetic requirements of the light-dependent protochlorophyllide oxidoreductase.有光或无光条件下:比较暗反应原叶绿素酸酯氧化还原酶的反应机制与光依赖型原叶绿素酸酯氧化还原酶的能量需求
PeerJ. 2014 Sep 2;2:e551. doi: 10.7717/peerj.551. eCollection 2014.
6
Hybrid RHF/MP2 geometry optimizations with the effective fragment molecular orbital method.采用有效片段分子轨道方法的混合RHF/MP2几何优化。
PLoS One. 2014 Feb 18;9(2):e88800. doi: 10.1371/journal.pone.0088800. eCollection 2014.
7
Exploration of swapping enzymatic function between two proteins: a simulation study of chorismate mutase and isochorismate pyruvate lyase.两种蛋白质间酶功能转换的探索:分支酸变位酶和异分支酸丙酮酸裂解酶的模拟研究。
Protein Sci. 2013 Jun;22(6):809-22. doi: 10.1002/pro.2264.
8
Molecular dynamics simulation of the last step of a catalytic cycle: product release from the active site of the enzyme chorismate mutase from Mycobacterium tuberculosis.结核分枝杆菌分支酸变位酶活性中心产物释放的催化循环最后一步的分子动力学模拟。
Protein Sci. 2012 Nov;21(11):1672-81. doi: 10.1002/pro.2143.
9
Pericyclic reactions catalyzed by chorismate-utilizing enzymes.由支链氨基酸利用酶催化的周环反应。
Biochemistry. 2011 Sep 6;50(35):7476-83. doi: 10.1021/bi2009739. Epub 2011 Aug 12.
10
pH Dependence of catalysis by Pseudomonas aeruginosa isochorismate-pyruvate lyase: implications for transition state stabilization and the role of lysine 42.铜绿假单胞菌异柠檬酸-丙酮酸裂解酶催化的 pH 依赖性:对过渡态稳定的影响及赖氨酸 42 的作用。
Biochemistry. 2011 Aug 23;50(33):7198-207. doi: 10.1021/bi200599j. Epub 2011 Jul 22.