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(细菌)叶绿素的π-大环平面的哪一侧有利于第五个配体的结合?

Which side of the pi-macrocycle plane of (bacterio)chlorophylls is favored for binding of the fifth ligand?

作者信息

Oba Toru, Tamiaki Hitoshi

机构信息

Department of Applied Chemistry, Faculty of Engineering, Utsunomiya University, Utsunomiya, Tochigi, 321-8585, Japan.

出版信息

Photosynth Res. 2002;74(1):1-10. doi: 10.1023/A:1020816128794.

Abstract

Reported crystallographic data and calculated molecular models indicated that chlorophyll (Chl) a and bacteriochlorophyll (BChl) a tend to bind the fifth ligand on the side of the macrocycle where the C13(2)-(R)-methoxycarbonyl moiety protrudes (denoting the 'back' side). The crystal structures of 34 photosynthetic proteins possessing (B)Chl cofactors revealed that most of Chl a and BChl a (and b) are coordinated by any peptidyl residue (e.g., histydyl-imidazolyl group), peptidyl backbone or water from the 'back' side. Almost all the cofactors that bind a water molecule as the fifth ligand in these proteins have a 'back' configuration. Theoretical model calculations for methyl chlorophyllide a (MeChlid a) and methyl bacteriochlorophyllide a (MeBChlid a) bound to an imidazole molecule indicated that the 'back' side is energetically favored for the ligand binding. These results are consistent with the fact that ethyl chlorophyllide a (EtChlid a) dihydrate crystal consists of the 'back' complex. The modeling also showed that both removal and stereochemical inverse of the C13(2)-methoxycarbonyl group affect the relative stability between the 'back' and 'face' complexes. The effect of the C13(2)-moiety on the choice of the macrocycle side for the ligand binding is discussed in relation to the function of P700.

摘要

已报道的晶体学数据和计算得到的分子模型表明,叶绿素(Chl)a和细菌叶绿素(BChl)a倾向于在大环的C13(2)-(R)-甲氧基羰基部分突出的一侧(即“背面”)结合第五个配体。34种含有(B)Chl辅因子的光合蛋白的晶体结构显示,大多数Chl a和BChl a(以及b)由“背面”的任何肽基残基(如组氨酰-咪唑基团)、肽基主链或水配位。在这些蛋白质中,几乎所有将水分子作为第五个配体结合的辅因子都具有“背面”构型。与咪唑分子结合的甲基叶绿素a(MeChlid a)和甲基细菌叶绿素a(MeBChlid a)的理论模型计算表明,“背面”在能量上有利于配体结合。这些结果与叶绿素a乙酯(EtChlid a)二水合物晶体由“背面”复合物组成这一事实一致。该模型还表明,C13(2)-甲氧基羰基基团的去除和立体化学反转都会影响“背面”和“正面”复合物之间的相对稳定性。结合P700的功能,讨论了C13(2)-部分对大环配体结合侧选择的影响。

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