Mello Bernardo A, Tu Yuhai
IBM T. J. Watson Research Center, Yorktown Heights, NY 10598, USA.
Proc Natl Acad Sci U S A. 2005 Nov 29;102(48):17354-9. doi: 10.1073/pnas.0506961102. Epub 2005 Nov 17.
The classical Monod-Wyman-Changeux model for homogeneous allosteric protein complex is generalized in this article to model the responses of heterogeneous receptor complexes to multiple types of ligand stimulus. We show that the recent in vivo experimental data of Escherichia coli chemotaxis responses for mutant strains with different expression levels of the chemo-receptors to different types of stimulus [Sourjik, V. & Berg, H. C. (2004) Nature 428, 437-441] all can be explained consistently within this generalized Monod-Wyman-Changeux model. Based on the model and the existing data, responses of all of the strains (studied in this article) to the presence of any combinations of ligand (Ser and MeAsp) concentrations are predicted quantitatively for future experimental verification. Through modeling the in vivo response data, our study reveals important information about the properties of different types of individual receptors, as well as the composition of the cluster. The energetic contribution of the nonligand binding, cytoplasmic parts of the cluster, such as CheA and CheW, is also discussed. The generalized allosteric model provides a consistent framework in understanding signal integration and differentiation in bacterial chemotaxis. It should also be useful for studying the functions of other heterogeneous receptor complexes.
本文对用于均一别构蛋白复合物的经典莫诺德-怀曼-尚热模型进行了推广,以模拟异质受体复合物对多种类型配体刺激的响应。我们表明,最近关于不同化学受体表达水平的大肠杆菌突变株对不同类型刺激的体内趋化反应实验数据[Sourjik, V. & Berg, H. C. (2004) Nature 428, 437 - 441],在这个推广的莫诺德-怀曼-尚热模型中都能得到一致的解释。基于该模型和现有数据,对本文所研究的所有菌株对配体(丝氨酸和甲基天冬氨酸)浓度的任何组合存在时的反应进行了定量预测,以供未来实验验证。通过对体内反应数据进行建模,我们的研究揭示了关于不同类型单个受体的性质以及簇的组成的重要信息。还讨论了簇中不与配体结合的细胞质部分(如CheA和CheW)的能量贡献。这个推广的别构模型为理解细菌趋化中的信号整合和分化提供了一个一致的框架。它对于研究其他异质受体复合物的功能也应该是有用的。