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化学趋向性并不计算单个分子。

Chemotaxing do not count single molecules.

作者信息

Mattingly Henry H, Kamino Keita, Ong Jude, Kottou Rafaela, Emonet Thierry, Machta Benjamin B

机构信息

Center for Computational Biology, Flatiron Institute.

Institute of Molecular Biology, Academia Sinica.

出版信息

ArXiv. 2024 Nov 27:arXiv:2407.07264v2.

PMID:39040643
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11261978/
Abstract

Understanding biological functions requires identifying the physical limits and system-specific constraints that have shaped them. In chemotaxis, gradient-climbing speed is information-limited, bounded by the sensory information they acquire from real-time measurements of their environment. However, it remains unclear what limits this information. Past work conjectured that 's chemosensing is limited by the physics of molecule arrivals at their sensors. Here, we derive the physical limit on behaviorally-relevant information, and then perform single-cell experiments to quantify how much information 's signaling pathway encodes. We find that encode two orders of magnitude less information than the physical limit due to their stochastic signal processing. Thus, system-specific constraints, rather than the physical limit, have shaped the evolution of this canonical sensory-motor behavior.

摘要

理解生物功能需要确定塑造这些功能的物理极限和特定系统的约束条件。在趋化作用中,梯度攀升速度受信息限制,其上限是它们从对环境的实时测量中获取的感官信息。然而,目前尚不清楚是什么限制了这些信息。过去的研究推测,[生物名称]的化学感应受分子到达其传感器的物理过程限制。在这里,我们推导出行为相关信息的物理极限,然后进行单细胞实验,以量化[生物名称]的信号通路编码了多少信息。我们发现,由于其随机信号处理,[生物名称]编码的信息比物理极限少两个数量级。因此,是特定系统的约束条件,而非物理极限,塑造了这种典型的感觉运动行为的进化。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f072/11606493/3d9a299688fa/nihpp-2407.07264v2-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f072/11606493/3010625365aa/nihpp-2407.07264v2-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f072/11606493/ad545cb6176a/nihpp-2407.07264v2-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f072/11606493/3d9a299688fa/nihpp-2407.07264v2-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f072/11606493/3010625365aa/nihpp-2407.07264v2-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f072/11606493/ad545cb6176a/nihpp-2407.07264v2-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f072/11606493/3d9a299688fa/nihpp-2407.07264v2-f0003.jpg

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本文引用的文献

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Time-reversal symmetry breaking in the chemosensory array reveals a general mechanism for dissipation-enhanced cooperative sensing.化学感受器阵列中的时间反演对称破缺揭示了一种用于增强耗散合作传感的通用机制。
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Signal integration and adaptive sensory diversity tuning in Escherichia coli chemotaxis.大肠杆菌趋化作用中的信号整合与适应性感官多样性调节
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Direct measurement of dynamic attractant gradients reveals breakdown of the Patlak-Keller-Segel chemotaxis model.
直接测量动态趋化因子梯度揭示了 Patlak-Keller-Segel 趋化模型的崩溃。
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Trade-offs between cost and information in cellular prediction.细胞预测中的成本与信息权衡。
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Phys Rev Lett. 2023 Aug 11;131(6):068401. doi: 10.1103/PhysRevLett.131.068401.
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Collective behavior and nongenetic inheritance allow bacterial populations to adapt to changing environments.群体行为和非遗传信息的传递使得细菌种群能够适应不断变化的环境。
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A traveling-wave solution for bacterial chemotaxis with growth.具有生长的细菌趋化性的行波解
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