Takahashi Eiji, Wraight Colin A
Department of Biochemistry and Center for Biophysics and Computational Biology, University of Illinois, Urbana-Champaign, 61801, USA.
J Biol Chem. 2006 Feb 17;281(7):4413-22. doi: 10.1074/jbc.M511359200. Epub 2005 Dec 14.
In reaction centers of Rhodobacter sphaeroides, site-directed mutagenesis has implicated several acidic residues in the delivery of protons to the secondary quinone (Q(B)) during reduction to quinol. In a double mutant (Asp(L210) --> Asn + Asp(M17) --> Asn) that is severely impaired in proton transfer capability over a wide pH range, proton transfer was "rescued" by added weak acids. For low pK(a) acids the total concentration of salt required near neutral pH was high. The ionic strength effect of added salts stimulated the rate of proton-coupled electron transfer at pH < 7, but decreased it at pH > 7.5, indicating an effective isoelectric point between these limits. In this region, a substantial rate enhancement by weak acids was clearly evident. A Brønsted plot of activity versus pK(a) of the rescuing acids was linear, with a slope of -1, and extrapolated to a diffusion-limited rate at pK(a)(app) approximately 1. However, the maximum rate at saturating concentrations of acid did not correlate with pK(a), indicating that the acid and anion species compete for binding, both with weak affinity. This model predicts that pK(a)(app) corresponds to a true pK(a) = 4-5, similar to that for a carboxylic acid or Q(B)(-), itself. Only rather small, neutral acids were active, indicating a need to access a small internal volume, suggested to be a proton channel to the Q(B) domain. However, the on-rates were near the diffusion limit. The implications for intraprotein proton transfer pathway design are discussed.
在球形红杆菌的反应中心,定点诱变表明在还原为醌醇的过程中,有几个酸性残基参与了向次级醌(Q(B))传递质子。在一个双突变体(Asp(L210)→Asn + Asp(M17)→Asn)中,其在很宽的pH范围内质子转移能力严重受损,通过添加弱酸可“挽救”质子转移。对于低pK(a)的酸,在接近中性pH时所需盐的总浓度很高。添加盐的离子强度效应在pH < 7时刺激了质子耦合电子转移速率,但在pH > 7.5时降低了该速率,表明在这些极限之间存在一个有效的等电点。在这个区域,弱酸导致的速率显著提高是明显的。拯救酸的活性与pK(a)的布朗斯特图是线性的,斜率为-1,并外推到pK(a)(app)约为1时的扩散限制速率。然而,酸饱和浓度下的最大速率与pK(a)不相关,表明酸和阴离子物种以弱亲和力竞争结合。该模型预测pK(a)(app)对应于真实的pK(a)=4 - 5,类似于羧酸或Q(B)(-)本身的pK(a)。只有相当小的中性酸具有活性,这表明需要进入一个小的内部体积,推测这是一个通向Q(B)结构域的质子通道。然而,结合速率接近扩散极限。文中讨论了对蛋白质内质子转移途径设计的影响。