Castrignanò Tiziana, De Meo Paolo D'Onorio, Cozzetto Domenico, Talamo Ivano Giuseppe, Tramontano Anna
CASPUR, Consorzio Interuniversitario per le Applicazioni di Supercalcolo per Università e Ricerca. Via dei Tizii, 6/b, I-00185 Rome, Italy.
Nucleic Acids Res. 2006 Jan 1;34(Database issue):D306-9. doi: 10.1093/nar/gkj105.
The Protein Model Database (PMDB) is a public resource aimed at storing manually built 3D models of proteins. The database is designed to provide access to models published in the scientific literature, together with validating experimental data. It is a relational database and it currently contains >74,000 models for approximately 240 proteins. The system is accessible at http://www.caspur.it/PMDB and allows predictors to submit models along with related supporting evidence and users to download them through a simple and intuitive interface. Users can navigate in the database and retrieve models referring to the same target protein or to different regions of the same protein. Each model is assigned a unique identifier that allows interested users to directly access the data.
蛋白质模型数据库(PMDB)是一个旨在存储人工构建的蛋白质三维模型的公共资源库。该数据库旨在提供对科学文献中发表的模型以及验证实验数据的访问。它是一个关系型数据库,目前包含约240种蛋白质的74000多个模型。该系统可通过http://www.caspur.it/PMDB访问,允许预测者提交模型及相关支持证据,用户可通过简单直观的界面下载这些模型。用户可以在数据库中浏览并检索针对同一目标蛋白质或同一蛋白质不同区域的模型。每个模型都被赋予一个唯一标识符,方便感兴趣的用户直接访问数据。