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RMD:一个用于水稻基因组功能分析的水稻突变体数据库。

RMD: a rice mutant database for functional analysis of the rice genome.

作者信息

Zhang Jianwei, Li Caishun, Wu Changyin, Xiong Lizhong, Chen Guoxing, Zhang Qifa, Wang Shiping

机构信息

National Key Laboratory of Crop Genetic Improvement, National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan 430070, China.

出版信息

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D745-8. doi: 10.1093/nar/gkj016.

DOI:10.1093/nar/gkj016
PMID:16381972
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1347379/
Abstract

Rice Mutant Database (RMD, http://rmd.ncpgr.cn) is an archive for collecting, managing and searching information of the T-DNA insertion mutants generated by an enhancer trap system. We have generated approximately 129 000 rice mutant (enhancer trap) lines that are now being gathered in the database. Information collected in RMD includes mutant phenotypes, reporter-gene expression patterns, flanking sequences of T-DNA insertional sites, seed availability and others, and can be searched by respective ID, keyword, nucleotide sequence or protein sequence on the website. This database is both a mutant collection for identifying novel genes and regulatory elements and a pattern line collection for ectopic expression of target gene in specific tissue or at specific growth stage.

摘要

水稻突变体数据库(RMD,http://rmd.ncpgr.cn)是一个用于收集、管理和搜索由增强子捕获系统产生的T-DNA插入突变体信息的档案库。我们已经产生了约129000个水稻突变体(增强子捕获)株系,目前正在收集到该数据库中。RMD收集的信息包括突变体表型、报告基因表达模式、T-DNA插入位点的侧翼序列、种子可用性等,并且可以在网站上通过各自的ID、关键词、核苷酸序列或蛋白质序列进行搜索。该数据库既是用于鉴定新基因和调控元件的突变体库,也是用于在特定组织或特定生长阶段异位表达靶基因的模式株系库。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6198/1347379/225fe96d2c57/gkj016f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6198/1347379/b8343bce3ac8/gkj016f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6198/1347379/225fe96d2c57/gkj016f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6198/1347379/b8343bce3ac8/gkj016f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6198/1347379/225fe96d2c57/gkj016f2.jpg

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The map-based sequence of the rice genome.水稻基因组的基于图谱的序列。
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2
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Plant J. 2005 Jun;42(5):772-80. doi: 10.1111/j.1365-313X.2005.02408.x.
3
Rice mutant resources for gene discovery.用于基因发现的水稻突变体资源。
长链非编码 RNA 响应高渗胁迫,但不响应盐胁迫,主要富集在水稻根中。
Int J Mol Sci. 2024 Jun 5;25(11):6226. doi: 10.3390/ijms25116226.
4
A natural variation in OsDSK2a modulates plant growth and salt tolerance through phosphorylation by SnRK1A in rice.在水稻中,OsDSK2a 的自然变异通过 SnRK1A 的磷酸化来调节植物生长和耐盐性。
Plant Biotechnol J. 2024 Jul;22(7):1881-1896. doi: 10.1111/pbi.14308. Epub 2024 Feb 12.
5
Construction of Host Plant Insect-Resistance Mutant Library by High-Throughput CRISPR/Cas9 System and Identification of A Broad-Spectrum Insect Resistance Gene.利用高通量CRISPR/Cas9系统构建寄主植物抗虫突变体库并鉴定广谱抗虫基因
Adv Sci (Weinh). 2024 Jan;11(4):e2306157. doi: 10.1002/advs.202306157. Epub 2023 Nov 30.
6
Defensive Molecules Momilactones A and B: Function, Biosynthesis, Induction and Occurrence.防御分子 Momilactones A 和 B:功能、生物合成、诱导和存在。
Toxins (Basel). 2023 Mar 25;15(4):241. doi: 10.3390/toxins15040241.
7
Role of long non-coding RNAs in rice reproductive development.长链非编码RNA在水稻生殖发育中的作用。
Front Plant Sci. 2022 Nov 15;13:1040366. doi: 10.3389/fpls.2022.1040366. eCollection 2022.
8
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Plants (Basel). 2022 Nov 15;11(22):3118. doi: 10.3390/plants11223118.
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10
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Plant Mol Biol. 2004 Feb;54(3):325-34. doi: 10.1023/B:PLAN.0000036368.74758.66.
4
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Plant J. 2004 Aug;39(3):450-64. doi: 10.1111/j.1365-313X.2004.02145.x.
5
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6
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7
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