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对果蝇中可调节增强子-启动子通讯的Su(Hw)绝缘子之间远距离功能相互作用的研究。

Study of long-distance functional interactions between Su(Hw) insulators that can regulate enhancer-promoter communication in Drosophila melanogaster.

作者信息

Savitskaya Ekaterina, Melnikova Larisa, Kostuchenko Margarita, Kravchenko Elena, Pomerantseva Ekaterina, Boikova Tatiana, Chetverina Darya, Parshikov Aleksander, Zobacheva Polyna, Gracheva Elena, Galkin Alexander, Georgiev Pavel

机构信息

Department of the Control of Genetic Processes, Institute of Gene Biology, Russian Academy of Sciences, Moscow 119334, Russia.

出版信息

Mol Cell Biol. 2006 Feb;26(3):754-61. doi: 10.1128/MCB.26.3.754-761.2006.

DOI:10.1128/MCB.26.3.754-761.2006
PMID:16428433
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1347022/
Abstract

The Su(Hw) insulator found in the gypsy retrotransposon is the most potent enhancer blocker in Drosophila melanogaster. However, two such insulators in tandem do not prevent enhancer-promoter communication, apparently because of their pairing interaction that results in mutual neutralization. Furthering our studies of the role of insulators in the control of gene expression, here we present a functional analysis of a large set of transgenic constructs with various arrangements of regulatory elements, including two or three insulators. We demonstrate that their interplay can have quite different outcomes depending on the order of and distance between elements. Thus, insulators can interact with each other over considerable distances, across interposed enhancers or promoters and coding sequences, whereby enhancer blocking may be attenuated, cancelled, or restored. Some inferences concerning the possible modes of insulator action are made from collating the new data and the relevant literature, with tentative schemes illustrating the regulatory situations in particular model constructs.

摘要

在吉普赛逆转座子中发现的Su(Hw)绝缘子是黑腹果蝇中最有效的增强子阻断剂。然而,两个串联的此类绝缘子并不能阻止增强子与启动子的通讯,这显然是由于它们的配对相互作用导致了相互中和。为了进一步研究绝缘子在基因表达调控中的作用,我们在此展示了对大量具有各种调控元件排列(包括两个或三个绝缘子)的转基因构建体的功能分析。我们证明,它们的相互作用可能会根据元件的顺序和距离产生截然不同的结果。因此,绝缘子可以在相当远的距离上相互作用,跨越插入的增强子、启动子和编码序列,从而增强子阻断作用可能会减弱、消除或恢复。通过整理新数据和相关文献,我们对绝缘子可能的作用模式进行了一些推断,并给出了示意特定模型构建体中调控情况的初步方案。

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Study of long-distance functional interactions between Su(Hw) insulators that can regulate enhancer-promoter communication in Drosophila melanogaster.对果蝇中可调节增强子-启动子通讯的Su(Hw)绝缘子之间远距离功能相互作用的研究。
Mol Cell Biol. 2006 Feb;26(3):754-61. doi: 10.1128/MCB.26.3.754-761.2006.
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本文引用的文献

1
Pairing between gypsy insulators facilitates the enhancer action in trans throughout the Drosophila genome.吉普赛绝缘子之间的配对促进了增强子在整个果蝇基因组中的反式作用。
Mol Cell Biol. 2005 Nov;25(21):9283-91. doi: 10.1128/MCB.25.21.9283-9291.2005.
2
Insulators are fundamental components of the eukaryotic genomes.绝缘子是真核生物基因组的基本组成部分。
Heredity (Edinb). 2005 Jun;94(6):571-6. doi: 10.1038/sj.hdy.6800669.
3
Remote control of gene transcription.基因转录的远程控制
Hum Mol Genet. 2005 Apr 15;14 Spec No 1:R101-11. doi: 10.1093/hmg/ddi104.
4
Proximity among distant regulatory elements at the beta-globin locus requires GATA-1 and FOG-1.β-珠蛋白基因座上远距离调控元件之间的接近需要GATA-1和FOG-1。
Mol Cell. 2005 Feb 4;17(3):453-62. doi: 10.1016/j.molcel.2004.12.028.
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Inducible DNA-loop formation blocks transcriptional activation by an SV40 enhancer.可诱导的DNA环形成通过SV40增强子阻断转录激活。
EMBO J. 2005 Jan 26;24(2):358-67. doi: 10.1038/sj.emboj.7600531. Epub 2005 Jan 13.
6
Drosophila Su(Hw) insulator can stimulate transcription of a weakened yellow promoter over a distance.果蝇的Su(Hw)绝缘子能够在一定距离上刺激弱化的黄色启动子的转录。
Genetics. 2005 Jul;170(3):1133-42. doi: 10.1534/genetics.104.034587. Epub 2004 Nov 1.
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Boundary elements and nuclear organization.边界元件与细胞核组织
Biol Cell. 2004 Oct;96(8):617-29. doi: 10.1016/j.biolcel.2004.06.004.
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Multiple interactions between regulatory regions are required to stabilize an active chromatin hub.需要调控区域之间的多种相互作用来稳定一个活跃的染色质枢纽。
Genes Dev. 2004 Jun 15;18(12):1495-509. doi: 10.1101/gad.289704.
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Does looping and clustering in the nucleus regulate gene expression?细胞核中的环化和聚集是否调控基因表达?
Curr Opin Cell Biol. 2004 Jun;16(3):256-62. doi: 10.1016/j.ceb.2004.03.004.
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An endogenous suppressor of hairy-wing insulator separates regulatory domains in Drosophila.一种毛翅绝缘子的内源性抑制因子在果蝇中分隔调控结构域。
Proc Natl Acad Sci U S A. 2003 Nov 11;100(23):13436-41. doi: 10.1073/pnas.2333111100. Epub 2003 Nov 3.