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一种用于纵向轨迹和事件发生时间非参数功能映射的联合模型。

A joint model for nonparametric functional mapping of longitudinal trajectory and time-to-event.

作者信息

Lin Min, Wu Rongling

机构信息

Department of Statistics, University of Florida, Gainesville, FL 32611, USA.

出版信息

BMC Bioinformatics. 2006 Mar 15;7:138. doi: 10.1186/1471-2105-7-138.

Abstract

BACKGROUND

The characterization of the relationship between a longitudinal response process and a time-to-event has been a pressing challenge in biostatistical research. This has emerged as an important issue in genetic studies when one attempts to detect the common genes or quantitative trait loci (QTL) that govern both a longitudinal trajectory and developmental event.

RESULTS

We present a joint statistical model for functional mapping of dynamic traits in which the event times and longitudinal traits are taken to depend on a common set of genetic mechanisms. By fitting the Legendre polynomial of orthogonal properties for the time-dependent mean vector, our model does not rely on any curve, which is different from earlier parametric models of functional mapping. This newly developed nonparametric model is demonstrated and validated by an example for a forest tree in which stemwood growth and the time to first flower are jointly modelled.

CONCLUSION

Our model allows for the detection of specific QTL that govern both longitudinal traits and developmental processes through either pleiotropic effects or close linkage, or both. This model will have great implications for integrating longitudinal and event data to gain better insights into comprehensive biology and biomedicine.

摘要

背景

在生物统计学研究中,刻画纵向反应过程与事件发生时间之间的关系一直是一个紧迫的挑战。当人们试图检测控制纵向轨迹和发育事件的共同基因或数量性状基因座(QTL)时,这一问题在基因研究中已成为一个重要问题。

结果

我们提出了一个用于动态性状功能定位的联合统计模型,其中事件发生时间和纵向性状被认为依赖于一组共同的遗传机制。通过为时间依赖的均值向量拟合具有正交特性的勒让德多项式,我们的模型不依赖于任何曲线,这与早期功能定位的参数模型不同。通过一个林木实例对茎干生长和首次开花时间进行联合建模,展示并验证了这个新开发的非参数模型。

结论

我们的模型能够通过多效性效应或紧密连锁,或两者兼而有之,检测控制纵向性状和发育过程的特定QTL。该模型对于整合纵向数据和事件数据以更好地洞察综合生物学和生物医学具有重要意义。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/283a/1479376/887d035413d4/1471-2105-7-138-1.jpg

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