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高温结晶的正交晶系溶菌酶的精细结构:形态与分子间接触的相关性

Refined structure of orthorhombic lysozyme crystallized at high temperature: correlation between morphology and intermolecular contacts.

作者信息

Oki H, Matsuura Y, Komatsu H, Chernov A A

机构信息

Institute for Protein Research, Osaka University, Suita, Osaka 565, Japan.

出版信息

Acta Crystallogr D Biol Crystallogr. 1999 Jan;55(Pt 1):114-21. doi: 10.1107/S0907444998008713. Epub 1999 Jan 1.

Abstract

The structure of orthorhombic hen egg-white lysozyme (HEWL) crystallized at 310 K has been refined at 1.7 A resolution. Large displacements of the side-chain atoms with respect to the tetragonal structure were observed in many places, in contrast to small displacements of the main-chain atoms. A chloride-ion binding site was observed at an interface of two molecules, but at a different position to the binding site in the tetragonal form. The analysis of intermolecular contacts in the crystal has shown the presence of three independent intermolecular contacts which are called macrobonds A, B and C. Arginine side chains are frequently involved in these macrobonds, suggesting that the high frequency of this residue in HEWL may be a possible reason for the multiple polymorphs of this protein. The crystal forms were determined using a light-reflecting device on a four-circle diffractometer. Correlations between crystal forms and the three-dimensional macrobond networks were interpreted in terms of their components in various crystallographic planes, making use of approximate strengths of hydrogen-bond and van der Waals interatomic forces.

摘要

在310 K下结晶的正交晶系鸡蛋白溶菌酶(HEWL)结构已在1.7 Å分辨率下进行了精修。与主链原子的小位移相反,在许多位置观察到侧链原子相对于四方结构有大的位移。在两个分子的界面处观察到一个氯离子结合位点,但与四方晶型中的结合位点位置不同。对晶体中分子间接触的分析表明存在三种独立的分子间接触,分别称为大键A、B和C。精氨酸侧链经常参与这些大键,这表明HEWL中该残基的高频率可能是该蛋白质多种多晶型的一个可能原因。晶体形态是使用四圆衍射仪上的光反射装置确定的。晶体形态与三维大键网络之间的相关性根据它们在不同晶体学平面中的组成部分进行了解释,利用了氢键和范德华原子间力的近似强度。

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