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蛋白晶体水合作用和温度对溶菌酶单斜晶体侧链构象不均一性的影响。

Effects of protein-crystal hydration and temperature on side-chain conformational heterogeneity in monoclinic lysozyme crystals.

机构信息

Physics Department, Cornell University, Ithaca, NY 14853, USA.

出版信息

Acta Crystallogr D Struct Biol. 2018 Apr 1;74(Pt 4):264-278. doi: 10.1107/S2059798318000207. Epub 2018 Apr 3.

Abstract

The modulation of main-chain and side-chain conformational heterogeneity and solvent structure in monoclinic lysozyme crystals by dehydration (related to water activity) and temperature is examined. Decreasing the relative humidity (from 99 to 11%) and decreasing the temperature both lead to contraction of the unit cell, to an increased area of crystal contacts and to remodeling of primarily contact and solvent-exposed residues. Both lead to the depopulation of some minor side-chain conformers and to the generation of new conformations. Side-chain modifications and main-chain r.m.s.d.s associated with cooling from 298 to 100 K depend on relative humidity and are minimized at 85% relative humidity (r.h.). Dehydration from 99 to 93% r.h. and cooling from 298 to 100 K result in a comparable number of remodeled residues, with dehydration-induced remodeling somewhat more likely to arise from contact interactions. When scaled to equivalent temperatures based on unit-cell contraction, the evolution of side-chain order parameters with dehydration shows generally similar features to those observed on cooling to T = 100 K. These results illuminate the qualitative and quantitative similarities between structural perturbations induced by modest dehydration, which routinely occurs in samples prepared for 298 and 100 K data collection, and cryocooling. Differences between these perturbations in terms of energy landscapes and occupancies, and implications for variable-temperature crystallography between 180 and 298 K, are discussed. It is also noted that remodeling of a key lysozyme active-site residue by dehydration, which is associated with a radical decrease in the enzymatic activity of lysozyme powder, arises due to a steric clash with the residue of a symmetry mate.

摘要

考察了在脱(相关于水活度)水和降温的情况下,斜方晶溶菌酶晶体中主链和侧链构象异质性及溶剂结构的调制。降低相对湿度(从 99%降至 11%)和降低温度均导致晶胞收缩、晶体接触面积增大以及主要接触和溶剂暴露残基的重排。这两者均导致一些次要侧链构象的减少和新构象的产生。与从 298 降至 100 K 冷却相关的、来自侧链修饰和主链 r.m.s.d.的变化取决于相对湿度,在 85%相对湿度(r.h.)时最小。从 99%降至 93%r.h.的脱(水活度)和从 298 降至 100 K 的降温导致相同数量的重排残基,脱水诱导的重排更可能来自接触相互作用。当根据晶胞收缩缩放至等效温度时,与脱水相关的侧链序参数的演化显示出与在冷却至 T = 100 K 时观察到的一般相似的特征。这些结果阐明了在制备用于 298 和 100 K 数据收集的样品时经常发生的适度脱水和冷冻冷却所引起的结构扰动之间的定性和定量相似性。讨论了这些扰动在能量景观和占有率方面的差异,以及对 180 和 298 K 之间可变温度晶体学的影响。还注意到,由于与对称伴侣残基的空间冲突,脱水导致溶菌酶活性部位关键残基的重排,这与溶菌酶粉末酶活性的急剧下降有关。

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