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黑腹果蝇和拟暗果蝇中的hobo转座元件。

hobo transposable elements in Drosophila melanogaster and D. simulans.

作者信息

Boussy I A, Daniels S B

机构信息

Department of Biology, Loyola University of Chicago, Illinois 60626.

出版信息

Genet Res. 1991 Aug;58(1):27-34. doi: 10.1017/s0016672300029578.

DOI:10.1017/s0016672300029578
PMID:1657707
Abstract

Genomic patterns of occurrence of the transposable element hobo are polymorphic in the sibling species Drosophila melanogaster and D. simulans. Most tested strains of both species have apparently complete (3.0 kb) and smaller hobo elements (H lines), but in both species some strains completely lack such canonical hobo elements (E lines). The occurrence of H and E lines in D. simulans as well as in D. melanogaster implies that an hypothesis of recent introduction in the latter species is inadequate to explain the phylogenetic occurrence of hobo. Particular internally deleted elements, the approximately 1.5 kb Th1 and Th2 elements, are abundant in many lines of D. melanogaster, and an analogous 1.1 kb internally deleted element, h del sim, is abundant in most lines of D. simulans. Besides the canonical hobo sequences, both species (and their sibling species D. sechellia and D. mauritiana) have many hobo-hybridizing sequences per genome that do not appear to be closely related to the canonical hobo sequence.

摘要

转座因子hobo在黑腹果蝇和拟果蝇这两个姊妹物种中的基因组出现模式具有多态性。这两个物种的大多数测试菌株都有明显完整的(3.0 kb)和较小的hobo元件(H系),但在这两个物种中,有些菌株完全缺乏这种典型的hobo元件(E系)。hobo元件在拟果蝇以及黑腹果蝇中H系和E系的出现意味着,认为hobo是最近才引入后者物种的假设不足以解释其系统发生情况。特定的内部缺失元件,即大约1.5 kb的Th1和Th2元件,在许多黑腹果蝇品系中很丰富,而一个类似的1.1 kb内部缺失元件h del sim在大多数拟果蝇品系中很丰富。除了典型的hobo序列外,这两个物种(以及它们的姊妹物种塞舌尔果蝇和毛里求斯果蝇)每个基因组都有许多与hobo杂交的序列,这些序列似乎与典型的hobo序列没有密切关系。

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hobo transposable elements in Drosophila melanogaster and D. simulans.黑腹果蝇和拟暗果蝇中的hobo转座元件。
Genet Res. 1991 Aug;58(1):27-34. doi: 10.1017/s0016672300029578.
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引用本文的文献

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Birth, School, Work, Death, and Resurrection: The Life Stages and Dynamics of Transposable Element Proliferation.诞生、学校、工作、死亡和复活:转座元件增殖的生命阶段和动态。
Genes (Basel). 2019 May 3;10(5):336. doi: 10.3390/genes10050336.
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Drosophila relics hobo and hobo-MITEs transposons as raw material for new regulatory networks.果蝇遗迹hobo和hobo微型反向重复转座元件(hobo-MITEs)转座子作为新调控网络的原材料。
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Unraveling the evolutionary scenario of the hobo element in populations of Drosophila melanogaster and D. simulans in South America using the TPE repeats as markers.
利用TPE重复序列作为标记,解析南美洲黑腹果蝇和拟暗果蝇种群中hobo元件的进化情况。
Genet Mol Biol. 2016 Mar;39(1):145-50. doi: 10.1590/1678-4685-GMB-2015-0049.
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General survey of hAT transposon superfamily with highlight on hobo element in Drosophila.hAT转座子超家族概述,重点介绍果蝇中的hobo元件。
Genetica. 2012 Sep;140(7-9):375-92. doi: 10.1007/s10709-012-9687-0. Epub 2012 Oct 31.
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Sequence divergence within transposable element families in the Drosophila melanogaster genome.黑腹果蝇基因组中转座元件家族内的序列分歧。
Genome Res. 2003 Aug;13(8):1889-96. doi: 10.1101/gr.827603. Epub 2003 Jul 17.
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The hobo transposable element excises and has related elements in tephritid species.霍博转座元件可切除,并在实蝇物种中有相关元件。
Genetics. 1996 Jul;143(3):1339-47. doi: 10.1093/genetics/143.3.1339.
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The distribution of the transposable element Bari-1 in the Drosophila melanogaster and Drosophila simulans genomes.转座因子Bari-1在黑腹果蝇和拟暗果蝇基因组中的分布。
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