Ragagnin Geovani T, Bernardo Larissa P, Loreto Elgion L S
Universidade Federal de Santa Maria, Santa Maria, RS, Brazil.
Departamento de Bioquímica e Biologia Molecular, Universidade Federal de Santa Maria, Santa Maria, RS, Brazil.
Genet Mol Biol. 2016 Mar;39(1):145-50. doi: 10.1590/1678-4685-GMB-2015-0049.
Transposable elements (TEs) are nucleotide sequences found in most studied genomes. These elements are highly diversified and have a large variation in nucleotide structure and mechanisms of transposition. hobo is a member of class II, belonging to hAT superfamily, described inDrosophila melanogaster, and it presents in its Open Reading Frame, a repetitive region encoding the amino acids threonine-proline-glutamic acid (TPE), which shows variability in the number of repeats in some regions of the world. Due to this variability some evolutionary scenarios of the hobo element are discussed, such as the scenario of the invasion of hobo element in populations ofD. melanogaster. In the present study, we investigated 22 DNA sequences of D. melanogaster and seven sequences ofD. simulans, both from South America, to check the number of repetitions of TPE, in order to clarify the evolutionary scenario of thehobo element in these populations. Our results showed a monomorphism in populations of both species in South America, with only three TPE repeats. Hence, we discuss and propose an evolutionary scenario of the invasion of the hobo element in populations of D. melanogaster and D. simulans.
转座元件(TEs)是在大多数已研究的基因组中发现的核苷酸序列。这些元件高度多样化,在核苷酸结构和转座机制方面存在很大差异。hobo是II类元件的成员,属于hAT超家族,在黑腹果蝇中被描述,它在其开放阅读框中存在一个编码苏氨酸-脯氨酸-谷氨酸(TPE)氨基酸的重复区域,在世界某些地区该重复区域的重复次数存在变异性。由于这种变异性,讨论了hobo元件的一些进化情况,例如hobo元件在黑腹果蝇种群中的入侵情况。在本研究中,我们调查了来自南美洲的22个黑腹果蝇DNA序列和7个拟果蝇序列,以检查TPE的重复次数,从而阐明hobo元件在这些种群中的进化情况。我们的结果显示,南美洲这两个物种的种群中存在单态性,只有三个TPE重复序列。因此,我们讨论并提出了hobo元件在黑腹果蝇和拟果蝇种群中入侵的进化情况。