Otey Christopher R, Landwehr Marco, Endelman Jeffrey B, Hiraga Kaori, Bloom Jesse D, Arnold Frances H
Biochemistry and Molecular Biophysics, California Institute of Technology, Pasadena, California, USA.
PLoS Biol. 2006 May;4(5):e112. doi: 10.1371/journal.pbio.0040112. Epub 2006 Apr 11.
Creating artificial protein families affords new opportunities to explore the determinants of structure and biological function free from many of the constraints of natural selection. We have created an artificial family comprising 3,000 P450 heme proteins that correctly fold and incorporate a heme cofactor by recombining three cytochromes P450 at seven crossover locations chosen to minimize structural disruption. Members of this protein family differ from any known sequence at an average of 72 and by as many as 109 amino acids. Most (>73%) of the properly folded chimeric P450 heme proteins are catalytically active peroxygenases; some are more thermostable than the parent proteins. A multiple sequence alignment of 955 chimeras, including both folded and not, is a valuable resource for sequence-structure-function studies. Logistic regression analysis of the multiple sequence alignment identifies key structural contributions to cytochrome P450 heme incorporation and peroxygenase activity and suggests possible structural differences between parents CYP102A1 and CYP102A2.
创建人工蛋白质家族为探索结构和生物学功能的决定因素提供了新的机会,而不受自然选择的许多限制。我们创建了一个由3000种P450血红素蛋白组成的人工家族,这些蛋白通过在七个选定的交叉位置重组三种细胞色素P450来正确折叠并结合血红素辅因子,以尽量减少结构破坏。这个蛋白质家族的成员与任何已知序列平均有72个差异,多达109个氨基酸不同。大多数(>73%)正确折叠的嵌合P450血红素蛋白是具有催化活性的过氧化物酶;有些比亲本蛋白更耐热。955个嵌合体(包括折叠和未折叠的)的多序列比对是序列-结构-功能研究的宝贵资源。对多序列比对的逻辑回归分析确定了对细胞色素P450血红素掺入和过氧化物酶活性的关键结构贡献,并揭示了亲本CYP102A1和CYP102A2之间可能的结构差异。