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来自大肠杆菌的γ-谷氨酰转肽酶(谷胱甘肽代谢中的关键酶)及其反应中间体的晶体结构。

Crystal structures of gamma-glutamyltranspeptidase from Escherichia coli, a key enzyme in glutathione metabolism, and its reaction intermediate.

作者信息

Okada Toshihiro, Suzuki Hideyuki, Wada Kei, Kumagai Hidehiko, Fukuyama Keiichi

机构信息

Department of Biological Sciences, Graduate School of Science, Osaka University, Toyonaka, Osaka 560-0043, Japan.

出版信息

Proc Natl Acad Sci U S A. 2006 Apr 25;103(17):6471-6. doi: 10.1073/pnas.0511020103. Epub 2006 Apr 17.

Abstract

Gamma-glutamyltranspeptidase (GGT) is a heterodimic enzyme that is generated from the precursor protein through posttranslational processing and catalyzes the hydrolysis of gamma-glutamyl bonds in gamma-glutamyl compounds such as glutathione and/or the transfer of the gamma-glutamyl group to other amino acids and peptides. We have determined the crystal structure of GGT from Escherichia coli K-12 at 1.95 A resolution. GGT has a stacked alphabetabetaalpha fold comprising the large and small subunits, similar to the folds seen in members of the N-terminal nucleophile hydrolase superfamily. The active site Thr-391, the N-terminal residue of the small subunit, is located in the groove, from which the pocket for gamma-glutamyl moiety binding follows. We have further determined the structure of the gamma-glutamyl-enzyme intermediate trapped by flash cooling the GGT crystal soaked in glutathione solution and the structure of GGT in complex with l-glutamate. These structures revealed how the gamma-glutamyl moiety and l-glutamate are recognized by the enzyme. A water molecule was seen on the carbonyl carbon of the gamma-glutamyl-Thr-391 Ogamma bond in the intermediate that is to be hydrolyzed. Notably the residues essential for GGT activity (Arg-114, Asp-433, Ser-462, and Ser-463 in E. coli GGT) shown by site-directed mutagenesis of human GGT are all involved in the binding of the gamma-glutamyl moiety. The structure of E. coli GGT presented here, together with sequence alignment of GGTs, may be applicable to interpret the biochemical and genetic data of other GGTs.

摘要

γ-谷氨酰转肽酶(GGT)是一种异二聚体酶,它通过翻译后加工从前体蛋白产生,并催化γ-谷氨酰化合物(如谷胱甘肽)中γ-谷氨酰键的水解和/或将γ-谷氨酰基转移到其他氨基酸和肽上。我们已经确定了来自大肠杆菌K-12的GGT在1.95 Å分辨率下的晶体结构。GGT具有由大亚基和小亚基组成的αβα堆叠折叠结构,类似于N-末端亲核水解酶超家族成员中的折叠结构。活性位点苏氨酸-391(小亚基的N-末端残基)位于凹槽中,γ-谷氨酰部分结合口袋由此延伸。我们进一步确定了通过快速冷却浸泡在谷胱甘肽溶液中的GGT晶体捕获的γ-谷氨酰酶中间体的结构以及与L-谷氨酸结合的GGT的结构。这些结构揭示了γ-谷氨酰部分和L-谷氨酸是如何被该酶识别的。在即将被水解的中间体中,γ-谷氨酰-苏氨酸-391的Oγ键的羰基碳上可见一个水分子。值得注意的是,通过人GGT的定点诱变显示的GGT活性所必需的残基(大肠杆菌GGT中的精氨酸-114、天冬氨酸-433、丝氨酸-462和丝氨酸-463)都参与了γ-谷氨酰部分的结合。这里展示的大肠杆菌GGT结构以及GGTs 的序列比对,可能适用于解释其他GGTs的生化和遗传数据。

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