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地衣芽孢杆菌γ-谷氨酰转肽酶的低分辨率X射线结构:开放的活性位点裂隙以及可能参与金属离子识别的一簇酸性残基。

Low resolution X-ray structure of γ-glutamyltranspeptidase from Bacillus licheniformis: opened active site cleft and a cluster of acid residues potentially involved in the recognition of a metal ion.

作者信息

Lin Long-Liu, Chen Yi-Yu, Chi Meng-Chun, Merlino Antonello

机构信息

Department of Applied Chemistry, National Chiayi University, 300 Syuefu Road, Chiayi City 600, Taiwan.

Department of Chemical Sciences, University of Naples Federico II, Napoli, Italy; Istituto di Biostrutture e Bioimmagini, CNR, Napoli, Italy.

出版信息

Biochim Biophys Acta. 2014 Sep;1844(9):1523-9. doi: 10.1016/j.bbapap.2014.04.016. Epub 2014 Apr 26.

Abstract

γ-Glutamyltranspeptidases (γ-GTs) cleave the γ-glutamyl amide bond of glutathione and transfer the released γ-glutamyl group to water (hydrolysis) or acceptor amino acids (transpeptidation). These ubiquitous enzymes play a key role in the biosynthesis and degradation of glutathione, and in xenobiotic detoxification. Here we report the 3Å resolution crystal structure of Bacillus licheniformis γ-GT (BlGT) and that of its complex with l-Glu. X-ray structures confirm that BlGT belongs to the N-terminal nucleophilic hydrolase superfamily and reveal that the protein possesses an opened active site cleft similar to that reported for the homologous enzyme from Bacillus subtilis, but different from those observed for human γ-GT and for γ-GTs from other microorganisms. Data suggest that the binding of l-Glu induces a reordering of the C-terminal tail of BlGT large subunit and allow the identification of a cluster of acid residues that are potentially involved in the recognition of a metal ion. The role of these residues on the conformational stability of BlGT has been studied by characterizing the autoprocessing, enzymatic activity, chemical and thermal denaturation of four new Ala single mutants. The results show that replacement of Asp568 with an Ala affects both the autoprocessing and structural stability of the protein.

摘要

γ-谷氨酰转肽酶(γ-GTs)可切割谷胱甘肽的γ-谷氨酰胺键,并将释放出的γ-谷氨酰基转移至水(水解)或受体氨基酸(转肽作用)上。这些普遍存在的酶在谷胱甘肽的生物合成与降解以及外源性物质解毒过程中发挥着关键作用。在此,我们报道了地衣芽孢杆菌γ-GT(BlGT)及其与L-谷氨酸复合物的3Å分辨率晶体结构。X射线结构证实BlGT属于N端亲核水解酶超家族,并揭示该蛋白具有一个开放的活性位点裂隙,类似于枯草芽孢杆菌同源酶所报道的结构,但不同于人γ-GT以及其他微生物γ-GTs所观察到的结构。数据表明,L-谷氨酸的结合诱导了BlGT大亚基C端尾巴的重排,并使得能够鉴定出一组可能参与金属离子识别的酸性残基。通过对四个新的丙氨酸单突变体的自加工、酶活性、化学和热变性进行表征,研究了这些残基对BlGT构象稳定性的作用。结果表明,用丙氨酸取代天冬氨酸568会影响该蛋白的自加工和结构稳定性。

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