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用于检测呼吸道标本中军团菌属的传统和实时核酸序列扩增技术的开发。

Development of conventional and real-time NASBA for the detection of Legionella species in respiratory specimens.

作者信息

Loens K, Beck T, Goossens H, Ursi D, Overdijk M, Sillekens P, Ieven M

机构信息

Department of Microbiology, University of Antwerp UA, Antwerp, Belgium.

出版信息

J Microbiol Methods. 2006 Dec;67(3):408-15. doi: 10.1016/j.mimet.2006.04.012. Epub 2006 May 30.

Abstract

Isothermal nucleic acid sequence-based amplification (NASBA) was applied to detect Legionella 16S rRNA. The assay was originally developed as a Legionella pneumophila conventional NASBA assay with electrochemiluminescence (ECL) detection and was subsequently adapted to a L. pneumophila real-time NASBA format and a Legionella spp. real-time NASBA using molecular beacons. L. pneumophila RNA prepared from a plasmid construct was used to assess the analytical sensitivity of the assay. The sensitivity of the NASBA assay was 10 molecules of in vitro wild type L. pneumophila RNA and 0.1-1 colony-forming units (CFU) of L. pneumophila. In spiked respiratory specimens, the sensitivity of the NASBA assays was 1-10000 CFU of L. pneumophila serotype 1 depending on the background. After dilution of the nucleic acid extract prior to amplification, 1-10 CFU of L. pneumophila serotype 1 could be detected with both detection methods. Finally, 27 respiratory specimens, well characterized by culture and PCR, collected during a L. pneumophila outbreak, were tested by conventional and real-time NASBAs. All 11 PCR positive samples were positive by conventional NASBA, 9/11 and 10/11 were positive by L. pneumophila real-time NASBA and Legionella spp. real-time NASBA, respectively.

摘要

基于核酸序列的等温扩增技术(NASBA)被应用于检测嗜肺军团菌16S rRNA。该检测方法最初是作为一种带有电化学发光(ECL)检测的嗜肺军团菌传统NASBA检测方法开发的,随后被改编为嗜肺军团菌实时NASBA检测形式以及使用分子信标的嗜肺军团菌属实时NASBA检测方法。从质粒构建体中制备的嗜肺军团菌RNA被用于评估该检测方法的分析灵敏度。NASBA检测方法的灵敏度为体外野生型嗜肺军团菌RNA的10个分子以及嗜肺军团菌的0.1 - 1个菌落形成单位(CFU)。在加标的呼吸道标本中,NASBA检测方法的灵敏度取决于背景,对于嗜肺军团菌血清型1为1 - 10000 CFU。在扩增前对核酸提取物进行稀释后,两种检测方法均能检测到1 - 10 CFU的嗜肺军团菌血清型1。最后,对在一次嗜肺军团菌暴发期间收集的、通过培养和PCR进行了充分鉴定的27份呼吸道标本,采用传统NASBA和实时NASBA进行检测。所有11份PCR阳性样本通过传统NASBA检测均为阳性,分别有9/11和10/11通过嗜肺军团菌实时NASBA和嗜肺军团菌属实时NASBA检测为阳性。

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