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本文引用的文献

1
Multiple equilibria in complex chemical reaction networks: extensions to entrapped species models.复杂化学反应网络中的多重平衡:对截留物种模型的扩展
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2
Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades.蛋白激酶级联反应中多位点磷酸化引发的信号转导开关与双稳性
J Cell Biol. 2004 Feb 2;164(3):353-9. doi: 10.1083/jcb.200308060. Epub 2004 Jan 26.
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A positive-feedback-based bistable 'memory module' that governs a cell fate decision.一种基于正反馈的双稳态“记忆模块”,其控制细胞命运决定。
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The roles of APC and Axin derived from experimental and theoretical analysis of the Wnt pathway.通过对Wnt信号通路的实验和理论分析得出的APC和Axin的作用。
PLoS Biol. 2003 Oct;1(1):E10. doi: 10.1371/journal.pbio.0000010. Epub 2003 Oct 13.
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EGFR activation coupled to inhibition of tyrosine phosphatases causes lateral signal propagation.表皮生长因子受体(EGFR)激活并结合酪氨酸磷酸酶抑制可导致侧向信号传导。
Nat Cell Biol. 2003 May;5(5):447-53. doi: 10.1038/ncb981.
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Hysteresis drives cell-cycle transitions in Xenopus laevis egg extracts.滞后现象驱动非洲爪蟾卵提取物中的细胞周期转变。
Proc Natl Acad Sci U S A. 2003 Feb 4;100(3):975-80. doi: 10.1073/pnas.0235349100. Epub 2002 Dec 30.
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Testing a mathematical model of the yeast cell cycle.测试酵母细胞周期的数学模型。
Mol Biol Cell. 2002 Jan;13(1):52-70. doi: 10.1091/mbc.01-05-0265.
8
The cyclin-dependent kinases cdk2 and cdk5 act by a random, anticooperative kinetic mechanism.细胞周期蛋白依赖性激酶cdk2和cdk5通过一种随机的、反协同动力学机制发挥作用。
J Biol Chem. 2001 Dec 21;276(51):48292-9. doi: 10.1074/jbc.M102034200. Epub 2001 Oct 16.
9
A model for a network of phosphorylation-dephosphorylation cycles displaying the dynamics of dominoes and clocks.一个展示多米诺骨牌和时钟动态的磷酸化-去磷酸化循环网络模型。
J Theor Biol. 2001 May 21;210(2):167-86. doi: 10.1006/jtbi.2000.2294.
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Kinetic analysis of a molecular model of the budding yeast cell cycle.芽殖酵母细胞周期分子模型的动力学分析
Mol Biol Cell. 2000 Jan;11(1):369-91. doi: 10.1091/mbc.11.1.369.

理解复杂酶驱动反应网络中的双稳性。

Understanding bistability in complex enzyme-driven reaction networks.

作者信息

Craciun Gheorghe, Tang Yangzhong, Feinberg Martin

机构信息

Mathematical Biosciences Institute, 231 West 18th Avenue, Ohio State University, Columbus, OH 43210, USA.

出版信息

Proc Natl Acad Sci U S A. 2006 Jun 6;103(23):8697-702. doi: 10.1073/pnas.0602767103. Epub 2006 May 30.

DOI:10.1073/pnas.0602767103
PMID:16735474
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1592242/
Abstract

Much attention has been paid recently to bistability and switch-like behavior that might be resident in important biochemical reaction networks. There is, in fact, a great deal of subtlety in the relationship between the structure of a reaction network and its capacity to engender bistability. In common physicochemical settings, large classes of extremely complex networks, taken with mass action kinetics, cannot give rise to bistability no matter what values the rate constants take. On the other hand, bistable behavior can be induced in those same settings by certain very simple and classical mass action mechanisms for enzyme catalysis of a single overall reaction. We present a theorem that distinguishes between those mass action networks that might support bistable behavior and those that cannot. Moreover, we indicate how switch-like behavior results from a well-studied mechanism for the action of human dihydrofolate reductase, an important anti-cancer target.

摘要

最近,人们对重要生化反应网络中可能存在的双稳性和类似开关的行为给予了极大关注。事实上,反应网络的结构与其产生双稳性的能力之间存在着大量微妙之处。在常见的物理化学环境中,一大类极其复杂的网络,采用质量作用动力学,无论速率常数取何值,都不会产生双稳性。另一方面,在相同环境中,通过某些非常简单且经典的单步总反应酶催化质量作用机制,可以诱导出双稳性行为。我们提出了一个定理,用于区分那些可能支持双稳性行为的质量作用网络和那些不能支持双稳性行为的网络。此外,我们还指出了人类二氢叶酸还原酶(一种重要的抗癌靶点)的作用机制(该机制已得到充分研究)是如何导致类似开关的行为的。