• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

密码子使用与热稳定性之间的相关性。

Correlation between codon usage and thermostability.

作者信息

Van der Linden Marx Gomes, de Farias Sávio Torres

机构信息

Laboratório Nacional de Computação Cientifica, Petrópolis, Rio de Janeiro, Brazil.

出版信息

Extremophiles. 2006 Oct;10(5):479-81. doi: 10.1007/s00792-006-0533-0. Epub 2006 Jul 8.

DOI:10.1007/s00792-006-0533-0
PMID:16830074
Abstract

Variations of arginine codon usage between organisms may have important implications to thermostability. The preferential usage of AGR codons for arginine in thermophiles and hyperthermophiles implies positive error minimization, contributing to avoid mutations that could harm protein thermostability. This bias is not a mere consequence of increased G + C content, as it has been previously suggested, and may represent a new mechanism of adaptation to protein thermostability.

摘要

生物体之间精氨酸密码子使用的差异可能对热稳定性具有重要影响。嗜热菌和超嗜热菌中优先使用AGR密码子编码精氨酸意味着正向错误最小化,有助于避免可能损害蛋白质热稳定性的突变。这种偏向性并非如之前所认为的那样仅仅是G + C含量增加的结果,它可能代表了一种适应蛋白质热稳定性的新机制。

相似文献

1
Correlation between codon usage and thermostability.密码子使用与热稳定性之间的相关性。
Extremophiles. 2006 Oct;10(5):479-81. doi: 10.1007/s00792-006-0533-0. Epub 2006 Jul 8.
2
Preferred codons and amino acid couples in hyperthermophiles.嗜热菌中的偏好密码子和氨基酸对。
Genome Biol. 2002 Jul 19;3(8):PREPRINT0006. doi: 10.1186/gb-2002-3-8-preprint0006.
3
Unusual usage of AGG and TTG codons in humans and their viruses.人类及其病毒中AGG和TTG密码子的异常使用情况。
Gene. 2005 Jun 6;352:92-9. doi: 10.1016/j.gene.2005.04.001.
4
Selection on codon usage for error minimization at the protein level.在蛋白质水平上为使错误最小化而对密码子使用进行的选择。
J Mol Evol. 2004 Sep;59(3):400-15. doi: 10.1007/s00239-004-2634-7.
5
Codon usage bias and mutation constraints reduce the level of error minimization of the genetic code.密码子使用偏好和突变限制降低了遗传密码的错误最小化水平。
J Mol Evol. 2004 Aug;59(2):258-66. doi: 10.1007/s00239-004-2620-0.
6
Preferred amino acids and thermostability.优选氨基酸与热稳定性。
Genet Mol Res. 2003 Dec 30;2(4):383-93.
7
Error minimization explains the codon usage of highly expressed genes in Escherichia coli.错误最小化解释了大肠杆菌中高表达基因的密码子使用情况。
Gene. 2007 Jan 31;387(1-2):150-5. doi: 10.1016/j.gene.2006.09.004. Epub 2006 Sep 26.
8
Translation efficiencies of synonymous codons for arginine differ dramatically and are not correlated with codon usage in chloroplasts.精氨酸同义密码子的翻译效率差异很大,与叶绿体中的密码子使用情况无关。
Gene. 2011 Feb 1;472(1-2):50-4. doi: 10.1016/j.gene.2010.09.008. Epub 2010 Oct 13.
9
Analysis of codon usage bias and base compositional constraints in iridovirus genomes.虹彩病毒基因组密码子使用偏好性和碱基组成限制的分析
Virus Res. 2007 Jun;126(1-2):196-206. doi: 10.1016/j.virusres.2007.03.001. Epub 2007 Apr 16.
10
Analysis of Nanoarchaeum equitans genome and proteome composition: indications for hyperthermophilic and parasitic adaptation.嗜热栖热放线菌基因组和蛋白质组组成分析:嗜热和寄生适应的指征
BMC Genomics. 2006 Jul 25;7:186. doi: 10.1186/1471-2164-7-186.

引用本文的文献

1
Analysis of codon usage patterns in open reading frame 4 of hepatitis E viruses.戊型肝炎病毒开放阅读框4的密码子使用模式分析
Beni Suef Univ J Basic Appl Sci. 2022;11(1):65. doi: 10.1186/s43088-022-00244-w. Epub 2022 May 10.
2
Complete Chloroplast Genome Sequence of Seemen (Fagaceae): Genome Structure, Adaptive Evolution, and Phylogenetic Relationships.壳斗科植物种子的叶绿体全基因组序列:基因组结构、适应性进化及系统发育关系
Life (Basel). 2022 Jan 9;12(1):92. doi: 10.3390/life12010092.
3
Tracing and exploring the evolutionary origin and systematic function of fish complement C9.

本文引用的文献

1
Thermo-search: lifestyle and thermostability analysis.热搜索:生活方式与热稳定性分析
In Silico Biol. 2004;4(3):377-80.
2
Preferred amino acids and thermostability.优选氨基酸与热稳定性。
Genet Mol Res. 2003 Dec 30;2(4):383-93.
3
Do ultrastable proteins from hyperthermophiles have high or low conformational rigidity?来自嗜热菌的超稳定蛋白质具有高构象刚性还是低构象刚性?
追踪和探索鱼类补体 C9 的进化起源和系统功能。
Mol Genet Genomics. 2021 May;296(3):665-676. doi: 10.1007/s00438-021-01773-2. Epub 2021 Mar 14.
4
Proteins of generalist and specialist pathogens differ in their amino acid composition.泛病原体和专性病原体的蛋白质在氨基酸组成上存在差异。
Life Sci Alliance. 2018 Jul 17;1(4):e201800017. doi: 10.26508/lsa.201800017. eCollection 2018 Aug.
5
Deciphering the rationale behind specific codon usage pattern in extremophiles.解析极端微生物中特定密码子使用模式的原理。
Sci Rep. 2018 Oct 19;8(1):15548. doi: 10.1038/s41598-018-33476-x.
6
Genome-Wide Analysis of Codon Usage Bias in Epichloë festucae.羊茅内生真菌密码子使用偏好的全基因组分析。
Int J Mol Sci. 2016 Jul 15;17(7):1138. doi: 10.3390/ijms17071138.
7
Genome-wide analysis of codon usage and influencing factors in chikungunya viruses.基孔肯雅病毒密码子使用情况及其影响因素的全基因组分析
PLoS One. 2014 Mar 4;9(3):e90905. doi: 10.1371/journal.pone.0090905. eCollection 2014.
8
ANCAC: amino acid, nucleotide, and codon analysis of COGs--a tool for sequence bias analysis in microbial orthologs.ANCA:COGs 的氨基酸、核苷酸和密码子分析——一种用于微生物同源物序列偏差分析的工具。
BMC Bioinformatics. 2012 Sep 8;13:223. doi: 10.1186/1471-2105-13-223.
9
Patterns and influencing factor of synonymous codon usage in porcine circovirus.猪圆环病毒同义密码子使用模式及其影响因素。
Virol J. 2012 Mar 15;9:68. doi: 10.1186/1743-422X-9-68.
Proc Natl Acad Sci U S A. 2000 Mar 28;97(7):2962-4. doi: 10.1073/pnas.97.7.2962.
4
Transproteomic evidence of a loop-deletion mechanism for enhancing protein thermostability.蛋白质热稳定性增强的环缺失机制的全蛋白质组学证据。
J Mol Biol. 1999 Jul 9;290(2):595-604. doi: 10.1006/jmbi.1999.2889.
5
Protein thermostability above 100 degreesC: a key role for ionic interactions.100摄氏度以上的蛋白质热稳定性:离子相互作用的关键作用。
Proc Natl Acad Sci U S A. 1998 Oct 13;95(21):12300-5. doi: 10.1073/pnas.95.21.12300.
6
Representation of amino acid sequences in terms of interaction energy in protein globules.
FEBS Lett. 1997 Nov 24;418(1-2):43-6. doi: 10.1016/s0014-5793(97)01346-x.
7
Analysis of protein conformational characteristics related to thermostability.与热稳定性相关的蛋白质构象特征分析
Protein Eng. 1996 Mar;9(3):265-71. doi: 10.1093/protein/9.3.265.
8
Hydrophobic core repacking and aromatic-aromatic interaction in the thermostable mutant of T4 lysozyme Ser 117-->Phe.T4溶菌酶Ser 117→Phe热稳定突变体中的疏水核心重新排列及芳香-芳香相互作用
Protein Sci. 1993 Aug;2(8):1285-90. doi: 10.1002/pro.5560020811.
9
Stabilization of creatinase from Pseudomonas putida by random mutagenesis.通过随机诱变稳定恶臭假单胞菌肌酸酶
Protein Sci. 1993 Oct;2(10):1612-20. doi: 10.1002/pro.5560021007.
10
Correlation between codon usage, regional genomic nucleotide composition, and amino acid composition in the cytochrome P-450 gene superfamily.
Biochim Biophys Acta. 1995 Apr 26;1261(3):394-400. doi: 10.1016/0167-4781(95)00037-h.