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使用可极化力场精确预测水中的绝对酸度常数:取代酚、甲醇和咪唑。

Accurate prediction of absolute acidity constants in water with a polarizable force field: substituted phenols, methanol, and imidazole.

作者信息

Kaminski George A

机构信息

Department of Chemistry, Central Michigan University, Mount Pleasant, MI 48859, USA.

出版信息

J Phys Chem B. 2005 Mar 31;109(12):5884-90. doi: 10.1021/jp050156r.

DOI:10.1021/jp050156r
PMID:16851640
Abstract

Validity of a force field with explicit treatment of electrostatic polarization in a form of inducible point dipoles for computing acidity constants was tested by calculating absolute pK(a) values of substituted phenols, methanol, and imidazole in water with the molecular dynamics technique. The last two systems were selected as tyrosine and histidine side-chain analogues, respectively. The solvent was represented by an explicit polarizable water model. Similar calculations were also performed with a modified OPLS-AA nonpolarizable force field. The resulting pK(a) values were compared with available experimental data. While the nonpolarizable force field yields errors of about 5 units in the absolute pK(a) values for the phenols and methanol, the polarizable force field produces the acidity constant values within a ca. 0.8 units accuracy. For the case of imidazole, the fixed-charges force field was capable of reproducing the experimental value of pK(a) (6.4 versus the experimental 7.0 units), but only at a cost of dramatically underestimating dimerization energy for the imidazolium-water complex. At the same time, the polarizable force field yields an even more accurate result of pK(a) = 6.96 without any sacrifice of the accuracy in the dimerization energy. It has also been demonstrated that application of Ewald summation for the long-range electrostatics is important, and substitution of a simple cutoff procedure with Born correction for ions can lead to underestimation of absolute pK(a) values by more than 5 units. The accuracy of the absolute acidity constants computed with the polarizable force field is very encouraging and opens road for further tests on more diverse organic molecules sets, as well as on proteins.

摘要

通过使用分子动力学技术计算水中取代酚、甲醇和咪唑的绝对pK(a)值,测试了一种以诱导点偶极子形式明确处理静电极化的力场在计算酸度常数方面的有效性。后两个体系分别被选作酪氨酸和组氨酸侧链类似物。溶剂由明确的可极化水模型表示。还使用改进的OPLS - AA不可极化力场进行了类似计算。将得到的pK(a)值与现有实验数据进行比较。对于酚类和甲醇,不可极化力场在绝对pK(a)值上产生约5个单位的误差,而可极化力场产生的酸度常数在约0.8个单位的精度范围内。对于咪唑的情况,固定电荷力场能够重现pK(a)的实验值(6.4,而实验值为7.0),但代价是显著低估了咪唑鎓 - 水络合物的二聚能。同时,可极化力场在不牺牲二聚能精度的情况下产生了更准确的pK(a)=6.96的结果。还证明了对长程静电作用应用埃瓦尔德求和很重要,用带有离子玻恩校正的简单截断程序替代会导致绝对pK(a)值低估超过5个单位。用可极化力场计算的绝对酸度常数的精度非常令人鼓舞,为对更多种类的有机分子集以及蛋白质进行进一步测试开辟了道路。

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