Miedema Henk, Vrouenraets Maarten, Wierenga Jenny, Eisenberg Bob, Schirmer Tilman, Baslé Arnaud, Meijberg Wim
Biomade Technology Foundation, Nijenborgh 4, 9747 AG Groningen, The Netherlands.
Eur Biophys J. 2006 Dec;36(1):13-22. doi: 10.1007/s00249-006-0084-4. Epub 2006 Jul 21.
A recent molecular dynamics study questioned the protonation state and physiological role of aspartate 127 (D127) of E. coli porin OmpF. To address that question we isolated two OmpF mutants with D127 either neutralized (D127N) or replaced by a positively charged lysine (D127K). The charge state of the residue at position 127 has clear effects on both conductance and selectivity. The D127K but not the D127N mutant expresses resilient conductance and selectivity fluctuations. These fluctuations reflect, we think, either changes in the ionization state of K127 and/or transitions between unstable subconformations as induced by the electrostatic repulsion between two positively charged residues, K127 and the nearby R167. Our results slightly favor the view that in WT OmpF residue D127 is deprotonated. As for the role of D127 in OmpF functionality, the gating of both mutants shows very similar sensitivity toward voltage as WT OmpF. Moreover, the current fluctuations of the D127K mutant were observed also in the absence of an applied electric field. We therefore dismiss D127 as a key residue in the control mechanism of the voltage-dependent gating of OmpF.
最近的一项分子动力学研究对大肠杆菌孔蛋白OmpF中天门冬氨酸127(D127)的质子化状态和生理作用提出了质疑。为了解决这个问题,我们分离出了两个OmpF突变体,其中D127要么被中和(D127N),要么被带正电荷的赖氨酸取代(D127K)。127位残基的电荷状态对电导率和选择性都有明显影响。D127K突变体而非D127N突变体表现出弹性的电导率和选择性波动。我们认为,这些波动反映了K127电离状态的变化和/或由两个带正电荷的残基K127和附近的R167之间的静电排斥所诱导的不稳定亚构象之间的转变。我们的结果略微倾向于野生型OmpF中残基D127去质子化的观点。至于D127在OmpF功能中的作用,两个突变体的门控对电压的敏感性与野生型OmpF非常相似。此外,在没有施加电场的情况下也观察到了D127K突变体的电流波动。因此,我们排除D127是OmpF电压依赖性门控控制机制中的关键残基。