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大豆脂氧合酶-1第一配位层突变体Asn694Gly的动力学、光谱学及结构研究

Kinetic, spectroscopic, and structural investigations of the soybean lipoxygenase-1 first-coordination sphere mutant, Asn694Gly.

作者信息

Segraves Erika N, Chruszcz Maksymilian, Neidig Michael L, Ruddat Viola, Zhou Jing, Wecksler Aaron T, Minor Wladek, Solomon Edward I, Holman Theodore R

机构信息

Department of Chemistry and Biochemistry, University of California, Santa Cruz, California 95064, USA.

出版信息

Biochemistry. 2006 Aug 29;45(34):10233-42. doi: 10.1021/bi060577e.

Abstract

In wild-type soybean LO-1 (WT sLO-1), Asn694 is a weak sixth ligand that is thought to be critical for enzymatic catalysis. In this investigation, N694G sLO-1 was studied to probe its contribution at this sixth ligand position to the kinetic and spectroscopic properties. The k(cat) value of N694G is approximately 230 times lower than that of WT sLO-1 at 25 degrees C, which can be partially explained by a lowered reduction potential of the iron as seen as a shift in the visible ligand-to-metal charge-transfer band (lambda(max) = 410 nm for N694G and lambda(max) = 425 nm for WT sLO-1). This conclusion was supported by a faster rate of oxidation of N694G by the product than that of WT sLO-1 (k(2) = 606 s(-)(1) for N694G and k(2) = 349 s(-)(1) for WT sLO-1). These results suggest a stronger ligand at the active site iron than the native Asn694, which is confirmed to be a water bound to the Fe(II) in the crystal structure. This produces a six-coordinate circular dichroism/magnetic circular dichroism (CD/MCD) spectra for ferrous N694G and an intermediate rhombic electron paramagnetic resonance (EPR) signal for ferric N694G. The EPR spectrum and its pH dependence suggest that the coordination environment of ferric N694G contains one hydroxide and one water. On the basis of both kinetic and structural factors, we propose that the Asn694 water-derived ligand would likely be a hydroxide and the active site, water-derived ligand a water in the ferric state, hence lowering the reaction rate of N694G more than would be expected from the lowered reduction potential alone.

摘要

在野生型大豆 LO-1(WT sLO-1)中,Asn694 是一个较弱的第六配体,被认为对酶催化至关重要。在本研究中,对 N694G sLO-1 进行了研究,以探究其在该第六配体位置对动力学和光谱性质的贡献。在 25℃时,N694G 的 k(cat)值比 WT sLO-1 低约 230 倍,这可以部分归因于铁的还原电位降低,表现为可见配体到金属电荷转移带的位移(N694G 的 lambda(max)=410nm,WT sLO-1 的 lambda(max)=425nm)。该结论得到了产物氧化 N694G 的速率比氧化 WT sLO-1 的速率更快的支持(N694G 的 k(2)=606 s(-1),WT sLO-1 的 k(2)=349 s(-1))。这些结果表明活性位点铁处的配体比天然的 Asn694 更强,这在晶体结构中被确认为与 Fe(II)结合的水。这产生了亚铁 N694G 的六配位圆二色性/磁圆二色性(CD/MCD)光谱和高铁 N694G 的中间菱形电子顺磁共振(EPR)信号。EPR 光谱及其对 pH 的依赖性表明高铁 N694G 的配位环境包含一个氢氧化物和一个水。基于动力学和结构因素,我们提出 Asn694 衍生的水配体可能是一个氢氧化物,而活性位点衍生的水配体在高铁状态下是一个水,因此 N694G 的反应速率降低幅度比仅由降低的还原电位所预期的更大。

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