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信号网络中的中性适应度景观。

Neutral fitness landscapes in signalling networks.

作者信息

Fernández Pau, Solé Ricard V

机构信息

ICREA-Complex Systems Lab, Universitat Pompeu Fabra, Parc de Recerca Biomedica de Barcelona, Dr Aiguader 88, 08003 Barcelona, Spain.

出版信息

J R Soc Interface. 2007 Feb 22;4(12):41-7. doi: 10.1098/rsif.2006.0152.

Abstract

Biological and technological systems process information by means of cascades of signals. Be they interacting genes, spiking neurons or electronic transistors, information travels across these systems, producing, for each set of external conditions, an appropriate response. In technology, circuits performing specific complex tasks are designed by humans. In biology, however, design has to be ruled out, confronting us with the question of how these systems could have arisen by accumulation of small changes. The key factor is the genotype-phenotype map. With the exception of RNA folding, not much is known about the exact nature of this mapping. Here, we show that structure of the genotype-phenotype map of simple feed-forward circuits is very close to the ones found in RNA; they have a large degree of neutrality, by which a circuit can be completely rewired keeping its input-output function intact, and there is a relatively small neighbourhood of a given circuit containing almost all the phenotypes.

摘要

生物和技术系统通过信号级联来处理信息。无论是相互作用的基因、发放脉冲的神经元还是电子晶体管,信息在这些系统中传播,针对每组外部条件产生适当的响应。在技术领域,执行特定复杂任务的电路是由人类设计的。然而,在生物学中,设计因素必须排除在外,这就使我们面临一个问题:这些系统是如何通过微小变化的积累而产生的。关键因素是基因型-表型映射。除了RNA折叠外,对于这种映射的确切性质我们了解不多。在这里,我们表明简单前馈电路的基因型-表型映射结构与RNA中的映射结构非常接近;它们具有很大程度的中性,即一个电路可以在保持其输入-输出功能不变的情况下完全重新布线,并且给定电路的一个相对较小的邻域包含了几乎所有的表型。

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