Bergling S
Biocenter of the University of Basel, Klingelbergstr. 70, CH-4056 Basel, Switzerland.
Biophys Chem. 1995 Nov;56(3):227-39. doi: 10.1016/0301-4622(95)00037-x.
Simple random walk simulations on triangular lattices were performed in order to obtain a basic quantitative understanding of the kinetics of diffusion influenced binary reactive processes of membrane associated peptides or proteins within the two dimensionality of lipid bilayers. The results of the Monte Carlo simulations are compared with various formal approximate steady-state approaches, such as presented by Keizer [Acc. Chem. Res., 18 (1985) 235-241] in the context of statistical nonequilibrium thermodynamics or by Hardt [Biophys. Chem., 10 (1979) 239-243], based on the well known work of Delbrück and Adam. For diffusion controlled binary reactions of identical particles, nice agreement with the numerically simulated values is found in the low concentration limit for both Hardt's and Keizer's approach. For the latter a fluctuating steady-state particle source has to be considered. The dependence of the steady-state rate coefficient on system size is investigated, and the results are compared to the work of Swartz and Peacock-López [J. Chem. Phys., 95 (4) (1991) 2727-2731]. In order to elucidate the results, a practical application is considered. An application to a dimerization reaction on vesicles of typical experimental dimensions is given.
在三角形晶格上进行简单随机游走模拟,以便对脂质双层二维空间内与膜相关的肽或蛋白质的扩散影响二元反应过程的动力学有一个基本的定量理解。将蒙特卡罗模拟结果与各种形式的近似稳态方法进行比较,例如凯泽[《化学研究述评》,18 (1985) 235 - 241]在统计非平衡热力学背景下提出的方法,或基于德尔布吕克和亚当的著名工作,由哈特[《生物物理化学》,10 (1979) 239 - 243]提出的方法。对于相同粒子的扩散控制二元反应,在低浓度极限下,哈特和凯泽的方法都与数值模拟值有很好的一致性。对于后者,必须考虑波动的稳态粒子源。研究了稳态速率系数对系统大小的依赖性,并将结果与施瓦茨和皮科克 - 洛佩斯[《化学物理杂志》,95 (4) (1991) 2727 - 2731]的工作进行比较。为了阐明结果,考虑了一个实际应用。给出了一个在典型实验尺寸的囊泡上进行二聚化反应的应用。