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关于大分子的(1)H横向顺磁弛豫增强测量的实际方面。

Practical aspects of (1)H transverse paramagnetic relaxation enhancement measurements on macromolecules.

作者信息

Iwahara Junji, Tang Chun, Marius Clore G

机构信息

Laboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892-0520, USA.

出版信息

J Magn Reson. 2007 Feb;184(2):185-95. doi: 10.1016/j.jmr.2006.10.003. Epub 2006 Nov 2.

Abstract

The use of (1)H transverse paramagnetic relaxation enhancement (PRE) has seen a resurgence in recent years as method for providing long-range distance information for structural studies and as a probe of large amplitude motions and lowly populated transient intermediates in macromolecular association. In this paper we discuss various practical aspects pertaining to accurate measurement of PRE (1)H transverse relaxation rates (Gamma(2)). We first show that accurate Gamma(2) rates can be obtained from a two time-point measurement without requiring any fitting procedures or complicated error estimations, and no additional accuracy is achieved from multiple time-point measurements recorded in the same experiment time. Optimal setting of the two time-points that minimize experimental errors is also discussed. Next we show that the simplistic single time-point measurement that has been commonly used in the literature, can substantially underestimate the true value of Gamma(2), unless a relatively long repetition delay is employed. We then examine the field dependence of Gamma(2), and show that Gamma(2) exhibits only a very weak field dependence at high magnetic fields typically employed in macromolecular studies. The theoretical basis for this observation is discussed. Finally, we investigate the impact of contamination of the paramagnetic sample by trace amounts (5%) of the corresponding diamagnetic species on the accuracy of Gamma(2) measurements. Errors in Gamma(2) introduced by such diamagnetic contamination are potentially sizeable, but can be significantly reduced by using a relatively short time interval for the two time-point Gamma(2) measurement.

摘要

近年来,利用¹H横向顺磁弛豫增强(PRE)作为一种为结构研究提供长程距离信息的方法,以及作为探测大分子缔合中大幅度运动和低丰度瞬态中间体的手段,再度兴起。在本文中,我们讨论了与准确测量PRE¹H横向弛豫率(Γ₂)相关的各种实际问题。我们首先表明,无需任何拟合程序或复杂的误差估计,通过两点测量即可获得准确的Γ₂速率,并且在同一实验时间内记录的多个时间点测量并不能提高测量精度。我们还讨论了将实验误差降至最低的两个时间点的最佳设置。接下来我们表明,文献中常用的简单单点测量方法,除非采用相对较长的重复延迟,否则会大幅低估Γ₂的真实值。然后我们研究了Γ₂的场依赖性,发现在大分子研究中通常使用的高磁场下,Γ₂仅表现出非常微弱的场依赖性,并讨论了这一观察结果的理论基础。最后,我们研究了痕量(5%)相应抗磁物种对顺磁样品的污染对Γ₂测量准确性的影响。这种抗磁污染引入的Γ₂误差可能相当大,但通过在两点Γ₂测量中使用相对较短的时间间隔,可以显著降低误差。

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