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核糖体数据库项目(RDP-II):介绍myRDP空间和质量受控的公共数据。

The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data.

作者信息

Cole J R, Chai B, Farris R J, Wang Q, Kulam-Syed-Mohideen A S, McGarrell D M, Bandela A M, Cardenas E, Garrity G M, Tiedje J M

机构信息

Center for Microbial Ecology, Biomedical Physical Sciences, Michigan State University, East Lansing, MI 48824-4320, USA.

出版信息

Nucleic Acids Res. 2007 Jan;35(Database issue):D169-72. doi: 10.1093/nar/gkl889. Epub 2006 Nov 7.

Abstract

Substantial new features have been implemented at the Ribosomal Database Project in response to the increased importance of high-throughput rRNA sequence analysis in microbial ecology and related disciplines. The most important changes include quality analysis, including chimera detection, for all available rRNA sequences and the introduction of myRDP Space, a new web component designed to help researchers place their own data in context with the RDP's data. In addition, new video tutorials describe how to use RDP features. Details about RDP data and analytical functions can be found at the RDP-II website (http://rdp.cme.msu.edu/).

摘要

核糖体数据库项目(Ribosomal Database Project)已实现了大量新功能,以应对高通量rRNA序列分析在微生物生态学及相关学科中日益增长的重要性。最重要的变化包括对所有可用rRNA序列进行质量分析,包括嵌合体检测,以及引入了myRDP Space,这是一个新的网络组件,旨在帮助研究人员将自己的数据与RDP的数据相关联。此外,还有新的视频教程介绍如何使用RDP的功能。有关RDP数据和分析功能的详细信息可在RDP-II网站(http://rdp.cme.msu.edu/)上找到。

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