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小尺寸疏水实体溶剂化熵的计算评估。

Computational assessment of the entropy of solvation of small-sized hydrophobic entities.

作者信息

Mahajan Reema, Kranzlmüller Dieter, Volkert Jens, Hansmann Ulrich H E, Höfinger Siegfried

机构信息

Indian Institute of Technology, Delhi, Department of Chemical Engineering, Hauz Khas, New Delhi, India.

出版信息

Phys Chem Chem Phys. 2006 Dec 21;8(47):5515-21. doi: 10.1039/b611200e. Epub 2006 Nov 7.

Abstract

A high level polarizable force field is used to study the temperature dependence of hydrophobic hydration of small-sized molecules from computer simulations. Molecular dynamics (MD) simulations of liquid water at various temperatures form the basis of free energy perturbation calculations that consider the onset and growth of a repulsive sphere. This repulsive sphere acts as a model construct for the hydrophobic species. In the present study, an extension is pursued for seven independent target temperatures, ranging from close to the freezing point almost up to the boiling point of liquid water under standard conditions. Care is taken to maintain proper physico-chemical model descriptions by cross-checking with experimental water densities at the selected target temperatures. The polarizable force field description of molecular water turns out to be suitable throughout the entire temperature domain considered. Derivatives of the computed free energies of hydrophobic hydration with respect to the temperature give access to the changes in entropy. In practice the entropy differential is determined from the negative of the slope of tangential lines formed at a certain target temperature in the free energy profile. The obtained changes in entropy are negative for small-sized cavities, and hence reconfirm the basic ideas of the Lum-Chandler-Weeks theory on hydrophobic hydration of small-sized solutes.

摘要

采用高级可极化力场,通过计算机模拟研究小分子疏水水合作用的温度依赖性。不同温度下液态水的分子动力学(MD)模拟构成了自由能微扰计算的基础,该计算考虑了排斥球的形成和增长。这个排斥球作为疏水物质的模型结构。在本研究中,将范围扩展到七个独立的目标温度,从接近冰点到几乎达到标准条件下液态水的沸点。通过与所选目标温度下的实验水密度进行交叉核对,谨慎地保持适当的物理化学模型描述。结果表明,分子水的可极化力场描述在整个考虑的温度范围内都是合适的。疏水水合作用计算得到的自由能对温度的导数可以得到熵的变化。在实际中,熵差是由自由能曲线中某一目标温度处切线斜率的负值确定的。对于小尺寸空腔,得到的熵变是负的,因此再次证实了Lum-Chandler-Weeks关于小尺寸溶质疏水水合作用理论的基本观点。

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