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辐射损伤的硒代甲硫氨酸(Se-MET)晶体的单波长异常散射(SAD)和双波长多波长异常散射(MAD)相位分析比较

A comparison of SAD and two-wavelength MAD phasing for radiation-damaged Se-MET crystals.

作者信息

González Ana

机构信息

Stanford Synchrotron Radiation Laboratory, 2575 Sand Hill Road, MS 99, Menlo Park, CA 94025, USA.

出版信息

J Synchrotron Radiat. 2007 Jan;14(Pt 1):43-50. doi: 10.1107/S0909049506041045. Epub 2006 Dec 15.

Abstract

Although a case has been made that single-wavelength anomalous dispersion (SAD) is the optimal strategy for data collection in the presence of radiation damage, two-wavelength MAD experiments at the inflection and a high-energy remote point of the absorption edge have been shown to be a potentially successful alternative method. In order to further investigate the performance of both data collection strategies, a comparison of SAD and MAD phasing was carried out for increasingly damaged data sets from three different seleno-methionine protein samples collected under similar experimental conditions. In all but one example the MAD phases appeared to be less affected than SAD phases with increasing exposure to X-rays, and had a better overall success rate, indicating that this method should be given serious consideration when dealing with radiation-sensitive crystals. Simultaneous data collection in wedges at all wavelengths seems to be a very important factor in the success of MAD experiments; the decreased absorbed dose resulting from eschewing data collection at the maximum f '' wavelength may play a less important role. Specific radiation damage to the selenium atoms is found to be a minor effect compared with the effect on the anomalous dispersion signal, although potentially large enough to be a useful contribution to phasing in both SAD and MAD experiments.

摘要

尽管有观点认为单波长反常散射(SAD)是在存在辐射损伤情况下进行数据收集的最佳策略,但在吸收边的拐点和高能远点进行的双波长MAD实验已被证明是一种潜在成功的替代方法。为了进一步研究这两种数据收集策略的性能,对在相似实验条件下收集的来自三种不同硒代甲硫氨酸蛋白样品的损伤程度不断增加的数据集进行了SAD和MAD相位分析的比较。除了一个例子外,在所有情况下,随着X射线照射量的增加,MAD相位似乎比SAD相位受影响更小,并且总体成功率更高,这表明在处理对辐射敏感的晶体时,应认真考虑这种方法。在所有波长下同时进行楔形数据收集似乎是MAD实验成功的一个非常重要的因素;避免在最大f''波长处进行数据收集所导致的吸收剂量降低可能起到的作用较小。与对反常散射信号的影响相比,发现硒原子的特定辐射损伤是一个较小的影响,尽管其潜在影响可能大到足以在SAD和MAD实验的相位分析中做出有用的贡献。

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