Hasegawa Kazuya, Yamashita Keitaro, Murai Tomohiro, Nuemket Nipawan, Hirata Kunio, Ueno Go, Ago Hideo, Nakatsu Toru, Kumasaka Takashi, Yamamoto Masaki
Japan Synchrotron Radiation Research Institute, 1-1-1 Kouto, Sayo 679-5198, Japan.
RIKEN SPring-8 Center, 1-1-1 Kouto, Sayo 679-5148, Japan.
J Synchrotron Radiat. 2017 Jan 1;24(Pt 1):29-41. doi: 10.1107/S1600577516016362.
Serial crystallography, in which single-shot diffraction images are collected, has great potential for protein microcrystallography. Although serial femtosecond crystallography (SFX) has been successfully demonstrated, limited beam time prevents its routine use. Inspired by SFX, serial synchrotron crystallography (SSX) has been investigated at synchrotron macromolecular crystallography beamlines. Unlike SFX, the longer exposure time of milliseconds to seconds commonly used in SSX causes radiation damage. However, in SSX, crystals can be rotated during the exposure, which can achieve efficient coverage of the reciprocal space. In this study, mercury single-wavelength anomalous diffraction (Hg-SAD) phasing of the luciferin regenerating enzyme (LRE) was performed using serial synchrotron rotation crystallography. The advantages of rotation and influence of dose on the data collected were evaluated. The results showed that sample rotation was effective for accurate data collection, and the optimum helical rotation step depended on multiple factors such as multiplicity and partiality of reflections, exposure time per rotation angle and the contribution from background scattering. For the LRE microcrystals, 0.25° was the best rotation step for the achievable resolution limit, whereas a rotation step larger than or equal to 1° was favorable for Hg-SAD phasing. Although an accumulated dose beyond 1.1 MGy caused specific damage at the Hg site, increases in resolution and anomalous signal were observed up to 3.4 MGy because of a higher signal-to-noise ratio.
串行晶体学通过收集单次衍射图像,在蛋白质微晶学方面具有巨大潜力。尽管串行飞秒晶体学(SFX)已得到成功验证,但束流时间有限阻碍了其常规应用。受SFX启发,人们在同步辐射大分子晶体学光束线对串行同步辐射晶体学(SSX)进行了研究。与SFX不同,SSX中常用的毫秒至秒级较长曝光时间会导致辐射损伤。然而,在SSX中,晶体可在曝光期间旋转,这能够实现对倒易空间的有效覆盖。在本研究中,利用串行同步辐射旋转晶体学对荧光素再生酶(LRE)进行了汞单波长反常衍射(Hg-SAD)相位分析。评估了旋转的优势以及剂量对所收集数据的影响。结果表明,样品旋转对于准确的数据收集是有效的,最佳螺旋旋转步长取决于多个因素,如反射的多重性和部分性、每个旋转角度的曝光时间以及背景散射的贡献。对于LRE微晶,0.25°是实现分辨率极限的最佳旋转步长,而大于或等于1°的旋转步长有利于Hg-SAD相位分析。尽管累积剂量超过1.1 MGy会在汞位点造成特定损伤,但由于信噪比更高,在3.4 MGy之前分辨率和反常信号仍有所提高。